BAC Information

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BAC

Clone NameMSMg01-455G10
Chromosome18 (Build37)
Map Location 82,566,857 - 82,567,416
singlet/doubletsinglet
Overlap geneGalr1
Upstream geneLOC100039458, LOC100040871, B020010K11Rik
Downstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455G10.T7 (MSMg01no455_g10.b1)MSMg01-455G10.TJ (MSMg01no455_g10.g1)
ACCAG541949AG541950
length719731
length of high quality
(start - end)
560 (67 - 626)462 (81 - 542)
definitionCHROMAT_FILE: MSMg01no455_g10.b1 PHD_FILE: MSMg01no455_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:54 2005CHROMAT_FILE: MSMg01no455_g10.g1 PHD_FILE: MSMg01no455_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGTTCCAGTGCTGATAGACTTTTAGGCCCAGCCTTCTGTCTG
TGTTTGCACACAGTGGATGGAGTGGGGGTAGGGCTCTTTTACAAGGGCAT
TGGTTCCACTCTGGAGTACACTTTCTTCATAGTCTCATCTTCTAATGACC
CTACCTCCAGATGCCGCCATCTTGGTGATCAGATTTCAACCTATGAGGGA
TACACACATTCACATCAGCAGATGAGCTTTCTGTGCAAGGCTTATCACTG
TTATGAAGTGCGAGTCCAGCTCTTTGTGATGGGCACATTGTTTGACTATT
CCCATATGGAGGAAAGTGTAGGAAGAAAGTAGGATGTCTTTCCATAAATA
AATTAAAGCCCAATTACCTATTAAGGACTTTGCCTAAGCACTGACGGGCA
GAGAGATGATTCTGGCTTGAGACTGGTTGACTTAAAACAAGAATCTTATC
TAACGCTGGGAGGGTGGTAGGGTAGCACAGTGGGTGGGTGCTTTTGGGAG
GGAGCCTGGTCAAAGGCCCACTGATGTATGAACATCTGCGTGCTTTCAAC
AGATGCATTTTGGTTATTATAGTCTGTTCCCTGATGTGTCCGGCGAGTGT
TCTGGCTGTCCTTCACACAGCTTGCTTGGGGCTTCTCACAGTCTCCCCTG
AGCTCTCTCTTTCCTTCCC
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGATGCCACAGGAAGAG
ACAGCTCGTGAGAGATGATTTTATCCAGAAGAAAGCCGAGGGAGGTTGTA
AGGGTTTGTATACGATCGGCCCAGGGAGGGGCACTTTTAGAAGGTGTAGC
CTTGTTGAAGTAAGTGTGTCACTGTGGGCATGGGCTGATTCTAGCTGCCT
GTGAGCCAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTAGAACATTTA
GTCCTTCCTGTTATTTTCTACCTAAATGCTGCCATGTTCCTGCCTTGATG
ACAACAGACTGAACCTCTGAACCAGTAAGCCAGACCCAATTAAATGTTGC
CCTTTATAAGACTTGCTTTGGTCATGGTGTCTGTTCACAGCCGTAAAACC
CTAAAACTAAGACAGGTATTTGAAAGGAAAAAAAGTATATCTCGCCAGTT
GCCACAGTGTCTTATAGCCTGATCTGATCCCTTAAAACCTACAAGGTGGA
AGAAGAGAGCCTAACTCCCTCAGGTTCTCTGATCTCCCCAAGCTTCAGCA
AACATGCCTCACAGAGTATACATGCACATGTTTTATTACTTAACAAGACA
TGCCGTATCTAAATTCTCTTTAGTACCGATTTTGAATTTCTTATGGAAAT
ATAATTATCCCTTCCAAATTTAACTGTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_g10.b1 MSMg01no455_g10.b1 CHROMAT_FILE:
MSMg01no455_g10.b1 PHD_FILE: MSMg01no455_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:54 2005
         (560 letters)



>mm_chr18_82566657_82567616
          Length = 960

 Score =  959 bits (496), Expect = 0.0
 Identities = 544/560 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgatagacttttaggcccagccttctgtctgtgtttgcacacagtggatggagtggg 60
           ||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||
Sbjct: 760 tgctgatagacttttagccccagccttctgtctgcatttgcacacagtagatggagtggg 701

                                                                       
Query: 61  ggtagggctcttttacaagggcattggttccactctggagtacactttcttcatagtctc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 700 ggtagggctcttttacaagggcattggttccactctggagtatactttcctcatagtctc 641

                                                                       
Query: 121 atcttctaatgaccctacctccagatgccgccatcttggtgatcagatttcaacctatga 180
           ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 640 atcttctaatgaccctacctccagatgccaccatcttggtgatcagattttaacctatga 581

                                                                       
Query: 181 gggatacacacattcacatcagcagatgagctttctgtgcaaggcttatcactgttatga 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gggatacacacgttcacatcagcagatgagctttctgtgcaaggcttatcactgttatga 521

                                                                       
Query: 241 agtgcgagtccagctctttgtgatgggcacattgtttgactattcccatatggaggaaag 300
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 520 agtgcgagcccagctctttgtgatgggcacattgtgtgactattcccatatggaggaaag 461

                                                                       
Query: 301 tgtaggaagaaagtaggatgtctttccataaataaattaaagcccaattacctattaagg 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgtaggaagaaagtaggatgcctttccataaataaattaaagcccaattacctattaagg 401

                                                                       
Query: 361 actttgcctaagcactgacgggcagagagatgattctggcttgagactggttgacttaaa 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 actttgcctaagcactgatgggcagagagatgattctggcttgagactggttgacttaaa 341

                                                                       
Query: 421 acaagaatcttatctaacgctgggagggtggtagggtagcacagtgggtgggtgcttttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acaagaatcttatctaacgctgggagggtggtagggtagcacagtgggtgggtgcttttg 281

                                                                       
Query: 481 ggagggagcctggtcaaaggcccactgatgtatgaacatctgcgtgctttcaacagatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 280 ggagggagcctggtcaaaggcccactgatgtatgaacatctgcgtacttgcaacagatgc 221

                               
Query: 541 attttggttattatagtctg 560
           |||||||||| |||||||||
Sbjct: 220 attttggttactatagtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)