BAC Information

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BAC

Clone NameMSMg01-455J18
Chromosome18 (Build37)
Map Location 36,065,181 - 36,065,603
singlet/doubletsinglet
Overlap genenone
Upstream geneEtf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131
Downstream genePsd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455J18.T7 (MSMg01no455_j18.b1)MSMg01-455J18.TJ (MSMg01no455_j18.g1)
ACCAG542109AG542110
length742744
length of high quality
(start - end)		556 (43 - 598)508 (74 - 581)
definitionCHROMAT_FILE: MSMg01no455_j18.b1 PHD_FILE: MSMg01no455_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:10 2005CHROMAT_FILE: MSMg01no455_j18.g1 PHD_FILE: MSMg01no455_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
ATCCTAACTTACGGCTGCTGCTGACTGAAGTATTACCGTCTTCATTTTGG
AAATGAAGGTGTACACTTGTGGTTTTTTTTGTAAAAATAAAGTTTTGATG
TTTTTCTTTTTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTC
CAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGG
TTGCTGGGATTTGAACTCTGGACCTTTGGAAGAACAGTAGGGTGCTCTTA
CCCACTGAGCCATCTCACCAGCCCTTGATGGTTTATAATTTTTATTATCA
TTATACATAAGTACACTGTAGCTGTCTTCAGACGGACCAAAAGAGGGCAT
CAGATCTCATTACAGATGGTTGTGAGCCACCATAATGGTTGCTGGGATTA
GAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAGTCCT
CTCACCAGCCCATGTATAATAGATACGTAATGCTAGCACTGCAACATATT
TCAAGGTTGTTACTTGACAAGGCCATTGACTTGATTATAAGCTGAGGGAC
TAGAGAAATGACTCCGTTAAAAGTACTGACTACTCTTCCAGAAAACCAGG
GTTTGATTCCCAGTAACTTATATTATCTGTAACTCCAGTCTCAGGGATCT
TCTTGGATATCTCGACTAAACTCCCACATTTTTATAAAAAAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGACTGCATGAGATTG
TCTTAAAAAAAAAAAAAACAAGCAAAATTTCTCGTTCACTCTCTTCTGAC
CTCTGAGAACACTGAACACACACATTGAACCCATGTATTCATGCAGACAA
AAAAAGCTTTACCTAAAAAGTTTTTCATTAAAAATGAAATTCATAGCTGG
GCATGGCATGGTGGTGCATGCCACTTGAGAGGCAGAAGCGGGAGGGTCTC
CATGATCTCAAGTTCAGCCTGGTCTACAGAGTGAGGTCCAGGACAGCCAG
GGCTATGTAGTGAATCCCATATCCCCCCCCCAAAAAAAAAAGATAAATAA
ATAAAAATAAAATTCATTGATGGGGCTTCAAAGTCTAGATGACAGTTACA
CTATAGGAGATTTGAAAAGCTTTTAGAATATCTTATATAGCCAGTCTGCT
ATTTGTGGGTTATTCTTCTTCTCCTTCTTCTCCTTCTTCTTTTTCTTCTT
CTTCTTTTTGAAAAATTTTATTTATTTTATGTATGTGATTACACTGTAGC
TATTTCCAGAGACACCAGAAGAGGGTGTCAGATCCCATTACAGATGGTTG
TGAGCCACCATGTGGTAACTGGGAATTGAACTCACAACCTCTGGAAGAGG
AGTCATTGCTCTTAACCACTGAACCATCTCTCCAGTCCCATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_j18.g1 MSMg01no455_j18.g1 CHROMAT_FILE:
MSMg01no455_j18.g1 PHD_FILE: MSMg01no455_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:10 2005
         (508 letters)



>mm_chr18_36065181_36066088
          Length = 908

 Score =  797 bits (412), Expect = 0.0
 Identities = 422/426 (99%), Gaps = 3/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagcctggactgcatgagattgtcttaaaaaaaaaaaaaacaagcaaaatttctc 60
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 423 aaggccagcctggactgcatgagactgtctt-aaaaaaaaaaaaacaagcaaaatttctc 365

                                                                       
Query: 61  gttcactctcttctgacctctgagaacactgaacacacacattgaacccatgtattcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gttcactctcttctgacctctgagaacactgaacacacacattgaacccatgtattcatg 305

                                                                       
Query: 121 cagacaaaaaaagctttacctaaaaagtttttcattaaaaatgaaattcatagctgggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagacaaaaaaagctttacctaaaaagtttttcattaaaaatgaaattcatagctgggca 245

                                                                       
Query: 181 tggcatggtggtgcatgccacttgagaggcagaagcgggagggtctccatgatctcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tggcatggtggtgcatgccacttgagaggcagaagcgggagggtctccatgatctcaagt 185

                                                                       
Query: 241 tcagcctggtctacagagtgaggtccaggacagccagggctatgtagtgaatcccatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcagcctggtctacagagtgaggtccaggacagccagggctatgtagtgaatcccatatc 125

                                                                       
Query: 301 ccccccccaaaaaaaaaagataaataaataaaaataaaattcattgatggggcttcaaag 360
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cccccccc--aaaaaaaagataaataaataaaaataaaattcattgatggggcttcaaag 67

                                                                       
Query: 361 tctagatgacagttacactataggagatttgaaaagcttttagaatatcttatatagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tctagatgacagttacactataggagatttgaaaagcttttagaatatcttatatagcca 7

                 
Query: 421 gtctgc 426
           ||||||
Sbjct: 6   gtctgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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