BAC Information

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BAC

Clone NameMSMg01-456A08
Chromosome18 (Build37)
Map Location 41,786,635 - 41,786,934
singlet/doubletsinglet
Overlap genenone
Upstream geneEG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A08.T7 (MSMg01no456_a08.b1)MSMg01-456A08.TJ (MSMg01no456_a08.g1)
ACCAG542422AG542423
length744803
length of high quality
(start - end)
454 (71 - 524)301 (78 - 378)
definitionCHROMAT_FILE: MSMg01no456_a08.b1 PHD_FILE: MSMg01no456_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:41 2005CHROMAT_FILE: MSMg01no456_a08.g1 PHD_FILE: MSMg01no456_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGATCTTTCCAAAACTTTTATCATGAATGCGTGTTGGATC
TTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAATAGAAATTGGTCTGAAGTTCTCTATCTTTGTTG
GGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAAT
TGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCAT
CTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATT
TCTTTAGGTGATATGGCACTGCTTAGATGGCCACTTTGATCCTGATTCCA
CTTCTGGCACTTTGTATCTGGCCCCTACCATTGCCCCCTCTCCCCCACCC
CTTTCCATCTTTCCCCGTATCCATTCTTTTTTTGTATATATTATTTTTCC
GTCTGGCTCCCCTCCCCTCTTTTTTTTTACCCGCCGATATCCTN
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATCACTATTTGTGAGGTGCTGT
ATGAAAGAGACATCTTTAAGTGTTTTCCAACTAACTGTTAGGATGTACAC
AAAGGATTATTATTTTTAGACACATTATGGTATCCCCCAAAAGACCAAAC
CTTTAGATACATCTTCCAGAGAATTTCCAGAAAGGTTGAAATGGTCTTAA
GAGAAGAGGGAAGTTAAGATTAGAAATGAGTTTTCCATAGACCATTTCTC
CTTGATTTCAACACTACTGAAAATTGACTGGATAATTCTTTGTTGAGGGA
GATTGTCTTCTTCATTGTAAATTAAAAAATGCAGAGATCACTGAAATAAA
TACAACGATAGCAGGAATTTGGAAACAGTCGAGCTTTGTTGTACTGTTTC
TCAGGCTGCGCTCTTTAGGCATGGATTCTTTTAGTAATATTCTGTTGCGC
TCTAACAATTATTTTTTTGGTTCTTAAGCTCTTTTCATTCCAACTTACCT
TTGCCCTATCTATGTTGTATATCGCCCTTCTATTCATTTTTCCTTGATTT
TCTATTTTTTTCCTATCTCTCTTTTCTCTTTTCCTACTTGATTTTTCCTC
CTCTATATTTTTCTTTCCTGTTATCTATTTCTTCTCCCTGTTCTTTTTCT
CTCCCTCTTCTTTTTTGACTTTTTCCCGCTTTGTTTTACGCCCTCTTTTT
ATTCTTTCCTTCCTTAACTTTTTCCTATCCATCTATTTTGTCCTTTCTCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a08.g1 MSMg01no456_a08.g1 CHROMAT_FILE:
MSMg01no456_a08.g1 PHD_FILE: MSMg01no456_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:41 2005
         (301 letters)



>mm_chr18_41786434_41787134
          Length = 701

 Score =  503 bits (260), Expect = e-147
 Identities = 290/300 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   atcactatttgtgaggtgctgtatgaaagagacatctttaagtgttttccaactaactgt 61
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atcactatttgtgaggtattgtatgaaagagacatctttaagtgttttccaactaactgt 261

                                                                       
Query: 62  taggatgtacacaaaggattattatttttagacacattatggtatcccccaaaagaccaa 121
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 taggatgtacacaagggattattatttctagacacattatggtatcccccaaaagaccaa 321

                                                                       
Query: 122 acctttagatacatcttccagagaatttccagaaaggttgaaatggtcttaagagaagag 181
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct: 322 acctttagatacatcttccagagaatttccagaaaggttcaaatggtcttgagagaaaag 381

                                                                       
Query: 182 ggaagttaagattagaaatgagttttccatagaccatttctccttgatttcaacactact 241
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 382 ggaagttaagattagaaatgagttttccatagaccatttctccttgacttcaacactact 441

                                                                       
Query: 242 gaaaattgactggataattctttgttgagggagattgtcttcttcattgtaaattaaaaa 301
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 gaagattgactggataattctttgttgagggagattgtcttcttcattgtaaactaaaaa 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)