BAC Information

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BAC

Clone NameMSMg01-456B11
Chromosome18 (Build37)
Map Location 66,163,882 - 66,164,125
singlet/doubletsinglet
Overlap genenone
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1
Downstream geneCcbe1, Pmaip1, LOC100042852, Mc4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B11.T7 (MSMg01no456_b11.b1)MSMg01-456B11.TJ (MSMg01no456_b11.g1)
ACCAG542475AG542476
length730778
length of high quality
(start - end)
244 (74 - 317)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no456_b11.b1 PHD_FILE: MSMg01no456_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:47 2005CHROMAT_FILE: MSMg01no456_b11.g1 PHD_FILE: MSMg01no456_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAGAGGAT
CCGCGGAATTCTGTTTCTCCAGTCCTCACTATGAAGACTCCATCTAAGGC
AATAAATACAATGAATATTTCAAATGTATTGTTAATGGCTTCAACCTCTG
AGAGACCTAAATTCCAAGTACAAGAAATGCAAGTTGGGCTGAAGCGATAG
CTCAGAGGTTTAGAGCACTTGTTGCTTCTGCAGAGCCCCAACCCCGACAA
GGCAACTCACAACCATTGGTGAGTTCAGTTCCAGGAGATCCTATGATCTC
TTCTGGCCTCTGTGGAAGTCAGGTACATACATCCTAGATACATGCAGACA
AAATGCTCCTACGTACAAAAGAGAATAAATAAGTCTAAAAACAAAAGAGA
AATGCAAGTCACAATTTATGCCTTTCAAGAATGGAAGCACAAGTTACGTG
CTATAAGGCTGTTTTATTTTTAATGTCCTTAACTGTCATGTTTACAGAAC
GAATCTAGGTCCTAAGAACTCTACCTGTTGACTTGCCCAAAGCAAACGCA
TCTTCTGTAATCAGTATTCAGTTTTAGAAGGGGAAAGCAAAGGAACACAT
TTCCGTTTTTCACATCTGCAGAAACAGAGTTGGTTGAGGACAGGAAACCC
CCCTTTACCTGGGTTTGCTAATTATTCCTACTTAACTGAGGATTCCTATC
TAAAGGCCTCCTTAATCCCCAGTTTTTTGG
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCAT
TTTTTTTAATGGGGTTATTTGATTTTCTGGACTCCACCTTCTTGAGTTCT
TTATATATATTGGATATTAGTTCCCTATCTGATTTAGGATAGGTAAAGAT
TCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTTACAGTGTCTTTTG
CCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGAT
CTTACAGCACAAGCCATTGCTGTTTTTTTCTGTAATTTTTCCCCTGTGCC
CATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAATGTCT
CTGGTTTTATGTGGAGTTCTTTGATCCACTTATATTTGACCTCTTTACCT
GGAGATAGGATTGGATCTATTCTCATGCTCTGACTCTTATTATTTTTTTA
CTCTTTCTTGTGTTTAATCTCGTTTCTATGTTTTCTTATTTCGTTTTGCT
CATTTTTTCCCTATTGGATTGTCTCTTCTTATGTTTTTTTTTCCCTCCTT
TGTTTTCCTATTTTTTTTTCCGTTTTTCCCTTCGCCTGGTGGTCCCATTT
TTGCTCTTTTTTTCTCTTTTTCGTTTTATACTCTTATCCTTTTCCTTTTT
TTTTCTCCGCCTTCTTTCTTTCTTCTTTCTCTTTTCTCCCCCTCCCTTGT
TTTTCTCCCCCTCCCCTTTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b11.b1 MSMg01no456_b11.b1 CHROMAT_FILE:
MSMg01no456_b11.b1 PHD_FILE: MSMg01no456_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:47 2005
         (244 letters)



>mm_chr18_66163682_66164325
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcactatgaagactccatctaaggcaataaatacaatgaatatttcaaatgtattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcactatgaagactccatctaaggcaataaatacaatgaatatttcaaatgtattgtt 260

                                                                       
Query: 61  aatggcttcaacctctgagagacctaaattccaagtacaagaaatgcaagttgggctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggcttcaacctctgagagacctaaattccaagtacaagaaatgcaagttgggctgaa 320

                                                                       
Query: 121 gcgatagctcagaggtttagagcacttgttgcttctgcagagccccaaccccgacaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgatagctcagaggtttagagcacttgttgcttctgcagagccccaaccccgacaaggc 380

                                                                       
Query: 181 aactcacaaccattggtgagttcagttccaggagatcctatgatctcttctggcctctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcacaaccattggtgagttcagttccaggagatcctatgatctcttctggcctctgt 440

               
Query: 241 ggaa 244
           ||||
Sbjct: 441 ggaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)