MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-456C03
Chromosome	18 (Build37)
Map Location	77,798,442 - 77,843,707
singlet/doublet	doublet
Overlap gene	Rnf165
Upstream gene	EG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1
Downstream gene	8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG639576 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639576 MGI:3644751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins

name	EG664805 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664805 MGI:3645984
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins

name	LOC620139 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620139
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins

name	Ier3ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66191 MGI:1913441
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdhd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Katnal2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71206 MGI:1924234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pias2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17344 MGI:1096566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG639653 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639653 MGI:3646549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	St8sia5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225742 MGI:109243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Loxhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240411 MGI:1914609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 1 Protein

name	Rnf165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225743 MGI:2444521
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 83 ESTs, 1 Protein

name	8030462N17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212163 MGI:2444951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930465K10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67640 MGI:1914890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 1 Protein

name	Ccdc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225745 MGI:2385076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp5a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11946 MGI:88115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pstpip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19201 MGI:1335088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5430411K18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71423 MGI:1918673
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 94 ESTs, 3 Proteins

name	Cd33l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620235 MGI:3646642
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	Slc14a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108052 MGI:1351654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc14a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27411 MGI:1351653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG620155 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620155 MGI:3647029
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins

name	EG639576 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270187 GeneID:639576 MGI:3644751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins product : predicted gene, EG639576 transcript_id : XM_916065.3

name	EG664805 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270189 GeneID:664805 MGI:3645984
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins product : predicted gene, EG664805 transcript_id : XM_972803.2

name	LOC620139 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270191 GeneID:620139
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins product : similar to retinitis pigmentosa GTPase regulator interacting protein 1 transcript_id : XM_001472129.1

name	Ier3ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365900 GeneID:66191 MGI:1913441
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : immediate early response 3 interacting protein 1 transcript_id : NM_025409.2

name	Hdhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861227 GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 2 transcript_id : NM_029826.2

name	Hdhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861234 GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 2 transcript_id : NM_001039202.1

name	Hdhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861230 GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 2 transcript_id : NM_001039201.1

name	Katnal2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349930 GeneID:71206 MGI:1924234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : katanin p60 subunit A-like 2 transcript_id : NM_027721.2

name	Pias2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382362 GeneID:17344 MGI:1096566
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein inhibitor of activated STAT 2 transcript_id : NM_008602.3

name	EG639653 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383481 GeneID:639653 MGI:3646549
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG639653 transcript_id : NM_001039252.2

name	St8sia5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24233503 GeneID:225742 MGI:109243
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 transcript_id : NM_153124.1

name	Loxhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270193 GeneID:240411 MGI:1914609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 1 Protein product : lipoxygenase homology domains 1 transcript_id : XM_001472179.1

name	Rnf165 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270195 GeneID:225743 MGI:2444521
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 83 ESTs, 1 Protein product : ring finger protein 165 transcript_id : XM_129042.8

name	8030462N17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87196344 GeneID:212163 MGI:2444951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 8030462N17 gene transcript_id : NM_178670.3

name	Ccdc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130237 GeneID:225745 MGI:2385076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 5 transcript_id : NM_146089.2

name	Atp5a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126506325 GeneID:11946 MGI:88115
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 transcript_id : NM_007505.2

name	Pstpip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126506309 GeneID:19201 MGI:1335088
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proline-serine-threonine phosphatase-interacting protein 2 transcript_id : NM_013831.4

name	5430411K18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270198 GeneID:71423 MGI:1918673
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 94 ESTs, 3 Proteins product : RIKEN cDNA 5430411K18 gene transcript_id : XM_973419.2

name	Cd33l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270200 GeneID:620235 MGI:3646642
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : CD33 molecule-like 3 transcript_id : XM_884636.3

name	Slc14a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56118237 GeneID:108052 MGI:1351654
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 14 (urea transporter), member 1 transcript_id : NM_028122.3

name	Slc14a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849766 GeneID:27411 MGI:1351653
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 14 (urea transporter), member 2 transcript_id : NM_207651.2

name	Slc14a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130722 GeneID:27411 MGI:1351653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 14 (urea transporter), member 2 transcript_id : NM_030683.2

name	EG620155 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270208 GeneID:620155 MGI:3647029
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins product : predicted gene, EG620155 transcript_id : XM_884547.3

name	EG639576 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270188 GeneID:639576 MGI:3644751
definition	codon_start : 1 product : hypothetical protein protein_id : XP_921158.3

name	EG664805 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270190 GeneID:664805 MGI:3645984
definition	codon_start : 1 product : similar to functional smad suppressing element 18 protein_id : XP_977897.2

name	LOC620139 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270192 GeneID:620139
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472179.1

name	Ier3ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384796 GeneID:66191 MGI:1913441
definition	codon_start : 1 product : immediate early response 3 interacting protein 1 protein_id : NP_079685.1

name	Hdhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85861231 GeneID:76987 MGI:1924237
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 2 product : haloacid dehalogenase-like hydrolase domain containing 2 isoform 1 protein_id : NP_001034290.1

name	Hdhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313310 GeneID:76987 MGI:1924237
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : haloacid dehalogenase-like hydrolase domain containing 2 isoform 1 protein_id : NP_084102.1

name	Hdhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85861235 GeneID:76987 MGI:1924237
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 3 product : haloacid dehalogenase-like hydrolase domain containing 2 isoform 2 protein_id : NP_001034291.1

name	Katnal2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313044 GeneID:71206 MGI:1924234
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : katanin p60 subunit A-like 2 protein_id : NP_081997.1

name	Pias2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27532974 GeneID:17344 MGI:1096566
definition	GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IDA]; GO:0019789 - SUMO ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016925 - protein sumoylation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006351 - transcription, DNA-dependent [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : PIASxalpha6 product : Msx-interacting-zinc finger protein_id : NP_032628.2

name	EG639653 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986673 GeneID:639653 MGI:3646549
definition	codon_start : 1 product : hypothetical protein LOC639653 protein_id : NP_001034341.1

name	St8sia5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24233504 CCDS:CCDS29353.1 GeneID:225742 MGI:109243
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003828 - alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity [Evidence IDA]; GO:0008373 - sialyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform middle is encoded by transcript variant 2; sialyltransferase 8 (alpha-2, 8-sialyltransferase) E product : sialyltransferase 8E isoform middle protein_id : NP_694764.1

name	Loxhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270194 GeneID:240411 MGI:1914609
definition	codon_start : 1 product : lipoxygenase homology domains 1 protein_id : XP_001472229.1

name	Rnf165 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270196 GeneID:225743 MGI:2444521
definition	codon_start : 1 product : ring finger protein 165 protein_id : XP_129042.7

name	8030462N17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87196345 CCDS:CCDS29355.1 GeneID:212163 MGI:2444951
definition	codon_start : 1 product : hypothetical protein LOC212163 protein_id : NP_848785.2

name	Ccdc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122593 CCDS:CCDS29357.1 GeneID:225745 MGI:2385076
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : spindle associated product : coiled-coil domain containing 5 protein_id : NP_666201.1

name	Atp5a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680748 CCDS:CCDS29358.1 GeneID:11946 MGI:88115
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 protein_id : NP_031531.1

name	Pstpip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86355499 GeneID:19201 MGI:1335088
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IDA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence NAS] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence NAS] codon_start : 1 product : proline-serine-threonine phosphatase-interacting protein 2 protein_id : NP_038859.3

name	5430411K18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270199 GeneID:71423 MGI:1918673
definition	codon_start : 1 product : hypothetical protein LOC71423 protein_id : XP_978513.2

name	Cd33l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270201 GeneID:620235 MGI:3646642
definition	codon_start : 1 product : hypothetical protein protein_id : XP_889729.3

name	Slc14a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16945964 CCDS:CCDS29360.1 GeneID:108052 MGI:1351654
definition	GO_component : GO:0016021 - integral to membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015204 - urea transporter activity [Evidence IMP]; GO:0005372 - water transporter activity [Evidence IDA] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0015840 - urea transport [Evidence IMP]; GO:0006833 - water transport [Evidence IDA] codon_start : 1 note : solute carrier family 14 (urea transprorter), member 1 product : solute carrier family 14 (urea transporter), member 1 protein_id : NP_082398.1

name	Slc14a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46559420 CCDS:CCDS29361.1 GeneID:27411 MGI:1351653
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS] GO_function : GO:0015204 - urea transporter activity [Evidence IDA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : solute carrier family 14 (urea transporter), member 2 isoform a protein_id : NP_997534.1

name	Slc14a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507605 GeneID:27411 MGI:1351653
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS] GO_function : GO:0015204 - urea transporter activity [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : solute carrier family 14 (urea transporter), member 2 isoform b protein_id : NP_109608.1

name	EG620155 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270209 GeneID:620155 MGI:3647029
definition	codon_start : 1 product : similar to Ac2-210 protein_id : XP_889640.2

name	4930465K10Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94405062 GeneID:67640 MGI:1914890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 1 Protein product : RIKEN cDNA 4930465K10 gene transcript_id : XR_002327.1

clone name	MSMg01-381B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157I09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-456C03.T7 (MSMg01no456_c03.b1)	MSMg01-456C03.TJ (MSMg01no456_c03.g1)
ACC	AG542507	AG542508
length	824	806
length of high quality (start - end)	124 (62 - 185)	294 (78 - 371)
definition	CHROMAT_FILE: MSMg01no456_c03.b1 PHD_FILE: MSMg01no456_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:50 2005	CHROMAT_FILE: MSMg01no456_c03.g1 PHD_FILE: MSMg01no456_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:51 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(77,843,586 - 77,843,707)	(77,798,442 - 77,798,735)
sequence	TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT CAGAATAGCTGAAGCACTCGTTACAATCTTGAGTTGAGGTAACAAGCCAG GAAAGACTAAGCTAGAGTGTTCAAAGAGCTTAGTGTAGCAAGAGAGGACA CTAAAGAGGTGGGGGAGGTGAGGCGGGGGGCGGTTTGTTTTTTTTTNTTT TTTGTTTTGTGCTTGGCCGCTGCGTTTCTTTGCTGCTTTTTGTTTTTCCG CTTCGTTTCTTTTTGGTGTTGTGCTCTTTGTGTGTGTTTTTTCGCCCCTT TTTTTTTTTTCCTCTTCTTGTTTTTTTTTTTTTCTTCTTTTTTTTTTTTC TCTCTCCTTTTTCCTCTTCGTTGTTTTTGACCTTTCTGCTTCTTTTTCTT TTTTCCCCCGTTTTTTTTTTTTGTTCCTTTTTTTTTTTTTTTCTTCCTTC GCTCCTTTTTTTTTTCTCTTTTTTTTCGTTCTTTTTTTTTTTTTTCTTTC TTTTTTTTTTCTTTTTTGTTTTCTTTTTACCTCTCGCCTTGTCTCTTTTT TTCTTTTTTTTCTCTTTCCCTTCTTTTTTTTCTCTTTTTCTTCCTTTTTC TTTTTTGTCTCTTTTCGCCCTTTTTACTCTTTTTTCTCCCCTCGTTTTAT CCTTTTTCTTTCTTTTTTCTCCCTCTCCGTTTTTTTTATTTCCTTTCTTT TTCCTCCCCGTTTTTTCCTTATTTTTTTTTCTTTTCTTTTTCTCTTGTTC CCGTTTCTCCTCCTCCTCTCTTTTTCTCCTTCTCTCTTTCTTTCGTTGCC CTCTTCTTTCCTTGCTCCGCGCCC	NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGAACCTGTTCTGATGACTT GGGTTGTATACAGTAAGACCTCAATACGTACACATCTGAGACTCAATATT GGGTTGTACACAGCAGAGACTCAATAATGTTGCTAAGGCATGGGGCCATT TAAGTCAACTGCATTCTGTACAATTACTGGATTAGTGAAGAACTACCCTT GAAACGTACTGCTAGAGAATTCTGAAACGCTGGCCATCAGGTGAGAAAAG TAAAACCTTAGAGTCGGTTAGTATTTGTTTTCTGGAGGAAGCGAGAGTTA TCAGGCAGTTTGTTTTGATTAGGGGAGATGAAAGAGTTTTTTTTTCTTCT CTTTTTTATTTTCTTTCTCTCATTTCCCCTTCTTTTTTTATTCCTCTTTT TCTCTCTTTTTATTTTTTTTCACTTTTCCTTTTTTTTCTCTTTATTTTTT CCTCTTCTTCCTCTCTTTTATTCTTCGTTTTTGTTCTTGTTCTTCCATTA TCTCTTTTCCCTTCTTATTTTTCTTTCTGCTTCCATCCCTTTTTTCCTTC TTTTTCTGCCTTTCTCTCTCTCCTCTCTTTTTTGTTTTCTCGTATTTTTT ACTCTTCATTTTCTCTTTTTCCCTTTTTATTCTTCTTCTACCTTTTCTTT CATCCCCTTTATTCAATAATACTTTCCTCCCTCCTTTCTATCTTCTTCTA TCTTTCTCCCCCTCTCTCTCCCTCTATTCCTCACCTTTTGTCCTCTTTTC CTTCTC
quality values	Open. Hide. 6 6 6 15 25 43 37 23 18 18 15 11 15 7 9 9 9 10 23 34 34 18 15 10 9 9 9 10 9 9 10 10 14 14 28 28 28 28 28 28 28 30 47 47 44 33 33 29 28 28 16 16 9 9 9 9 9 9 9 10 19 23 22 28 28 34 37 37 39 43 43 27 38 42 29 29 19 32 39 57 57 57 57 57 59 59 57 43 35 24 20 20 25 25 35 26 24 22 20 32 32 57 57 44 44 31 36 36 19 19 18 19 27 37 42 48 57 57 44 34 21 14 14 24 32 41 41 35 35 28 41 41 54 54 57 44 44 30 30 28 40 44 57 57 57 44 44 28 23 23 18 24 34 34 43 47 48 48 48 48 48 48 48 43 43 43 50 50 50 50 47 47 39 30 28 25 25 25 30 24 21 12 15 11 8 8 8 8 8 10 17 19 12 12 15 3 0 3 12 13 14 19 13 17 11 12 12 13 11 10 9 6 6 8 8 6 6 10 8 8 9 12 11 11 11 11 10 10 10 10 12 10 10 9 10 10 10 9 9 8 7 7 7 8 8 11 8 8 8 8 8 8 8 6 6 8 8 8 8 8 13 8 9 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 9 8 8 8 8 8 10 8 8 8 8 9 10 10 12 18 16 19 19 19 23 16 14 12 13 8 8 8 8 8 8 8 8 8 8 8 8 12 18 16 22 21 15 15 18 16 12 13 9 9 11 11 11 11 18 22 33 24 24 28 28 28 21 29 15 13 8 8 8 8 6 6 8 11 11 13 19 9 9 9 10 9 9 11 13 10 10 9 9 9 15 15 17 11 9 9 11 12 12 12 13 10 10 10 10 10 10 12 15 12 9 8 8 8 8 10 10 15 16 15 12 13 9 9 8 8 12 17 26 22 17 14 9 9 9 15 8 8 8 8 8 10 11 10 15 19 20 20 14 16 13 10 10 14 18 23 23 9 9 9 10 9 9 9 10 10 8 8 8 10 10 10 10 9 9 16 12 12 10 10 8 8 8 8 8 12 14 20 34 37 25 19 19 19 14 9 9 10 13 13 24 16 12 12 8 10 8 10 15 16 15 10 10 13 13 14 10 16 18 29 28 21 19 16 9 10 10 8 8 8 8 10 10 10 10 8 8 8 8 8 13 8 8 8 8 9 9 10 11 8 8 8 8 8 8 7 8 7 8 9 9 9 10 13 19 24 15 13 6 6 10 8 16 16 23 18 13 24 14 14 9 12 9 9 9 9 12 11 11 10 10 13 19 12 10 13 16 12 11 11 11 15 15 13 9 9 8 13 11 12 11 20 10 14 11 10 10 15 11 9 17 7 7 8 8 10 13 11 12 15 19 10 10 10 10 12 12 16 13 8 6 6 6 7 8 8 11 12 13 8 8 8 8 10 8 10 8 8 6 6 6 11 13 9 8 9 8 8 12 15 19 14 11 12 9 9 9 9 9 12 15 15 10 8 8 8 8 8 10 8 8 6 6 8 6 8 10 10 21 15 15 15 9 9 8 8 8 8 8 8 13 10 14 12 12 11 10 10 9 10 15 11 9 8 8 8 8 13 8 8 8 9 9 13 15 9 9 11 11 10 10 10 14 15 11 11 11 13 16 18 11 10 10 19 17 22 19 22 28 23 11 14 9 9 10 12 8 8 8 8 10 19 19 19 15 15 10 12 12 10 10 10 8 13 8 9 9 19 19 11 9 9 12 12 12 12 11 10 9 9 9 10 12 11 10 10 10 10 8 6 6 8 8 8 8 10 8 8 8 8 8 10 10 16 11 10 8 8 6 7 6 6 8 8 8 8 8 9 9 9	Open. Hide. 0 3 6 6 8 10 11 11 9 9 15 12 9 9 9 15 12 26 26 37 39 39 41 42 50 50 50 41 41 41 32 25 15 9 9 10 10 10 9 12 13 14 27 26 34 34 37 37 37 37 39 39 47 47 47 47 43 37 39 39 37 25 17 19 10 8 9 12 12 8 8 13 16 22 30 33 33 59 50 50 59 47 47 53 50 50 53 57 57 57 57 50 53 53 53 57 57 57 57 54 54 57 68 68 68 68 68 57 51 50 50 50 50 50 68 59 59 54 44 42 42 31 30 37 44 32 28 26 26 26 36 36 57 57 57 57 57 57 57 68 57 57 57 57 54 57 57 57 46 46 44 57 57 57 57 57 57 57 59 57 57 57 44 44 33 43 32 50 50 50 50 54 54 54 57 57 57 57 52 57 57 57 57 52 57 52 52 52 52 52 52 52 52 59 59 57 57 57 57 57 57 43 59 59 57 57 59 57 52 43 43 33 33 33 43 41 44 59 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 59 59 59 59 59 57 57 57 57 57 52 52 45 57 57 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 52 52 52 44 43 33 33 38 43 43 52 52 43 42 33 33 43 43 52 52 52 52 57 50 47 43 43 43 43 44 43 43 31 27 32 27 27 23 36 28 37 37 46 44 48 48 26 27 16 22 17 15 15 32 25 43 39 37 37 44 44 47 42 35 35 35 44 59 59 59 57 48 39 42 37 30 24 28 20 25 25 24 24 26 26 35 47 41 28 23 23 18 21 12 12 15 11 11 11 18 18 23 11 11 12 11 12 12 18 14 13 13 13 17 11 8 8 8 8 8 11 12 10 10 13 28 10 10 10 8 8 8 8 8 6 6 8 8 8 9 12 11 12 8 6 6 10 8 14 14 12 12 12 9 9 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 9 9 12 8 8 8 10 8 8 12 16 11 11 10 8 8 8 10 8 8 15 9 8 8 6 6 6 10 10 8 8 8 8 11 8 10 13 16 10 8 6 6 8 8 9 9 8 8 9 9 12 17 12 11 11 11 10 10 10 10 8 8 9 9 10 9 9 8 8 10 12 8 10 10 10 11 10 12 11 11 15 16 15 15 11 8 8 8 8 8 8 6 6 8 8 8 9 9 9 9 8 8 8 8 8 8 8 8 10 13 14 10 8 8 9 9 9 8 8 8 8 11 12 9 9 9 9 10 8 10 13 13 14 13 12 9 11 11 8 10 8 8 8 8 16 19 15 15 14 15 12 8 8 8 10 10 10 10 15 8 8 8 8 8 13 8 8 8 8 10 10 10 10 9 9 9 10 19 12 10 10 9 10 8 10 8 8 8 10 9 16 10 10 6 6 8 6 8 8 10 15 12 10 10 10 10 10 10 10 10 10 10 15 10 9 6 7 6 8 8 11 21 12 8 8 10 10 12 10 16 15 13 13 11 10 10 10 11 11 8 8 7 6 8 8 11 10 10 10 10 9 10 10 10 10 10 8 9 9 12 14 24 14 14 14 14 9 12 15 8 8 8 8 8 6 7 8 8 8 11 8 8 8 8 8 8 8 8 8 8 11 8 8 6 7 7 7 10 8 8 8 8 8 8 8 8 8 8 8 7 9 10 10 12 13 13 8 8 8 6 6 10 10 15 13 11 11 11 8 10 8 8 8 8 8 10 10 10 11 10 8 8 6 6 8 10 9 9 10 11 13 13 12 10 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no456_c03.b1 MSMg01no456_c03.b1 CHROMAT_FILE:
MSMg01no456_c03.b1 PHD_FILE: MSMg01no456_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:50 2005
         (124 letters)



>mm_chr18_77843386_77843909
          Length = 524

 Score =  221 bits (114), Expect = 2e-62
 Identities = 120/122 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcactcgttacaatcttgagttgaggtaacaagccaggaaagactaagctagagtgtt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagcacacgttacaatcttgagttgaggtaacaagccaggaaagactaagctagagtgtt 263

                                                                       
Query: 61  caaagagcttagtgtagcaagagaggacactaaagaggtgggggaggtgaggcggggggc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaagagcttaatgtagcaagagaggacactaaagaggtgggggaggtgaggcggggggc 203

             
Query: 121 gg 122
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no456_c03.g1 MSMg01no456_c03.g1 CHROMAT_FILE:
MSMg01no456_c03.g1 PHD_FILE: MSMg01no456_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:51 2005
         (294 letters)



>mm_chr18_77798242_77798935
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgaacctgttctgatgacttgggttgtatacagtaagacctcaatacgtacacatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgaacctgttctgatgacttgggttgtatacagtaagacctcaatacgtacacatct 260

                                                                       
Query: 61  gagactcaatattgggttgtacacagcagagactcaataatgttgctaaggcatggggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagactcaatattgggttgtacacagcagagactcaataatgttgctaaggcatggggcc 320

                                                                       
Query: 121 atttaagtcaactgcattctgtacaattactggattagtgaagaactacccttgaaacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaagtcaactgcattctgtacaattactggattagtgaagaactacccttgaaacgt 380

                                                                       
Query: 181 actgctagagaattctgaaacgctggccatcaggtgagaaaagtaaaaccttagagtcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgctagagaattctgaaacgctggccatcaggtgagaaaagtaaaaccttagagtcgg 440

                                                                 
Query: 241 ttagtatttgttttctggaggaagcgagagttatcaggcagtttgttttgatta 294
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtatttgtcttctggaggaagcgagagttatcaggcagtttgttttgatta 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information