Query= MSMg01no456_g23.b1 MSMg01no456_g23.b1 CHROMAT_FILE:
MSMg01no456_g23.b1 PHD_FILE: MSMg01no456_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:15 2005
(140 letters)
>mm_chr18_59390588_59391127
Length = 540
Score = 215 bits (111), Expect = 1e-60
Identities = 135/145 (93%), Gaps = 6/145 (4%)
Strand = Plus / Minus
Query: 1 atgtactcaaaatt----aagaaaatggcacttaaggtgttgaacaagacacatacaaca 56
|||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 358 atgtactcaaaattaagaaagaaaatggcatttaaggtgttgaacaagtcacatacaaca 299
Query: 57 cagtaggcaaagtgcaaactcctcatataa-caacacaaaccacactatccttgatccaa 115
||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct: 298 cagtaggcaaagtgcaaactcctcaga-aaccaacacaaaccacactatccttgatccaa 240
Query: 116 ttcatcaattctgcttatatagttt 140
||||||| |||||||||||||||||
Sbjct: 239 ttcatcagttctgcttatatagttt 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space: 70224
Effective search space used: 70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no456_g23.g1 MSMg01no456_g23.g1 CHROMAT_FILE:
MSMg01no456_g23.g1 PHD_FILE: MSMg01no456_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:15 2005
(456 letters)
>mm_chr18_59245628_59246484
Length = 857
Score = 431 bits (223), Expect = e-125
Identities = 238/243 (97%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 1 agcagtgtttacagctcacacttcaggctttagaacacaacatgctgacatcttcagagc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agcagtgtttacagctcacacttcaggctttagaacacaacgtgctgacatcttcagagc 260
Query: 61 actgcaagttaaaggggaaaagtaatcaaggcagaattctggaaatgtcttggaaactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgcaagttaaaggggaaaagtaatcaaggcagaattctggaaatgtcttggaaactaa 320
Query: 121 agggaaatgaaaaaa-acctcttactcaaataactcagagaaatttactgcctctcattg 179
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 agggaaataaaaaaagacctcttactcaaataactcagagaaattcactgcctctcattg 380
Query: 180 agataaataagaaaaaattagaaaaataaataaatggataaatttcaaattacacccgaa 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agataaataagaaaaaattagaaaaataaataaatggatacatttcaaattacacccgaa 440
Query: 240 gta 242
|||
Sbjct: 441 gta 443
Score = 228 bits (118), Expect = 5e-64
Identities = 121/122 (99%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 237 gaagtacagatacaaattattatatacatgtgtatatgtgtatgatatatcatatatcat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaagtacagatacaaattattatatacatgtgtatatgtgtatgatatatcatatatcat 796
Query: 297 taaaaataaggtaatcagcaaaaaaattaagatacaaaacaggaggtaaaagtgataaca 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 797 taaaaataaggtaatcagcaaaaaa-ttaagatacaaaacaggaggtaaaagtgataaca 855
Query: 357 ca 358
||
Sbjct: 856 ca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
