BAC Information

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BAC

Clone NameMSMg01-457D02
Chromosome18 (Build37)
Map Location 39,859,974 - 39,860,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457D02.T7 (MSMg01no457_d02.b1)MSMg01-457D02.TJ (MSMg01no457_d02.g1)
ACCAG543317AG543318
length733796
length of high quality
(start - end)
314 (74 - 387)249 (82 - 330)
definitionCHROMAT_FILE: MSMg01no457_d02.b1 PHD_FILE: MSMg01no457_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:18 2005CHROMAT_FILE: MSMg01no457_d02.g1 PHD_FILE: MSMg01no457_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGAGTACTACCGAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCATCATTAATCATCAGGGAAATGCAAATCAAAGCAACCCGG
AGATTCCATCTCACACCAGTCAGAATAGCTAAGATCAAAAACTCAGGTGA
CAGCAGATGCTGGCGAAGATGTGGTGAAAGAGGAACATTACTCCACTGTC
GGTGAGATTGCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGTGGTTA
CTCAGATAATTGGACATACGGGAGGATCGAGAAACATCTCTCCTGGGGAT
ATATCCAGAAGATGTTCCAACTGGTAAGAAAGACGCATGATCGACTATGT
TCATAGGAGCCTTATTTATAGTAGCCAGAAGCTAGAAAGAACCCAGATGT
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGAGCATCATCCTGAGTGAGGTAACCCAATCACAAAAG
AACTCACATGATTTGTACTCCCTGTAAGTGAATATTAGCCCAGAAACTTA
TAGTACGCAAGAAACAATCTGGTAAACACATGAATCTCATGAAGAACGAT
GACAAAGCGGAGACTCTTTGCCCCCTCTTAAAT
TCCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTATGAAAAAAATACAT
TTGGAGGGGCTGGATGAATAATGGGAGATCAGAATAAAGAAGTAAATGCA
GTCTCAAATAGCAGCTCATAGTGATAGAGTAGGACTGTCTGTGATTTACA
GAGTATGTGAAGCTAAAAGAAAACAAAAGAAAAATATTGTATTGTTCAAA
GTCTCACACAAAAGGGTTTCACTCATGAGGCAGGAGTAGGGAGATGGAGA
AAGACACCAGAGGAAACAGTAAGTTTTAATATTTTTTATAACCATGTGAA
AATCGTCATAGACTTGGTATCCCTTGCCCCTCAAAGGTTTATATGTTAAA
GGTTTGATCCCTGGAATGGCTCCACCACCAAGTGGTAGAACCTTTAGGGG
AGGAAGCTGATAAGGATCTCCTTATAACACTTGGGAATTATGGTGTCCTA
AGGCAATGTAAGCTCTTCATGTGTACTATTTTATCCCACATCTCTTTCTC
CTTTTTCTTGACTATAAGGTTTTTGGATCACCTCCTTCTTGTTCTTCTCT
GCTTATTGTTTTTTTGCTTTGTCCTCCCTGTGTGATTACTTCTCTTTTGT
TTTTTTTCATATCTGTGTTGCTTATTCCTTTCTCAATATTGTTTAGCCTT
CTCTCTTTTGTTTCTCTCTTTTCCTTTAATATTATTTCCTCTATTTCCGC
TTTTTTTTCCTTTATTGGTTTTATCATTTCTTTGATCTTCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_d02.g1 MSMg01no457_d02.g1 CHROMAT_FILE:
MSMg01no457_d02.g1 PHD_FILE: MSMg01no457_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:19 2005
         (249 letters)



>mm_chr18_39859774_39860423
          Length = 650

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%), Gaps = 1/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatgaaaaaaa-tacatttggaggggctggatgaataatgggagatcagaataaaga 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtatgaaaaaaaatacatttggaggggctggatgaataatgggagatcagaataaaga 260

                                                                       
Query: 60  agtaaatgcagtctcaaatagcagctcatagtgatagagtaggactgtctgtgatttaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaatgcagtctcaaatagcagctcatagtgatagagtaggactgtctgtgatttaca 320

                                                                       
Query: 120 gagtatgtgaagctaaaagaaaacaaaagaaaaatattgtattgttcaaagtctcacaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtatgtgaagctaaaagaaaacaaaagaaaaatattgtattgttcaaagtctcacaca 380

                                                                       
Query: 180 aaagggtttcactcatgaggcaggagtagggagatggagaaagacaccagaggaaacagt 239
           ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 381 aaaaggtttcactcatgaggcaggagtagggagacggagagagacaccagaggaaacagt 440

                     
Query: 240 aagttttaat 249
           ||||||||||
Sbjct: 441 aagttttaat 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)