BAC Information

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BAC

Clone NameMSMg01-457G06
Chromosome18 (Build37)
Map Location 44,302,341 - 44,302,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12
Downstream geneLOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457G06.T7 (MSMg01no457_g06.b1)MSMg01-457G06.TJ (MSMg01no457_g06.g1)
ACCAG543469AG543470
length780810
length of high quality
(start - end)
429 (49 - 477)353 (78 - 430)
definitionCHROMAT_FILE: MSMg01no457_g06.b1 PHD_FILE: MSMg01no457_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:34 2005CHROMAT_FILE: MSMg01no457_g06.g1 PHD_FILE: MSMg01no457_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACATGCGTGCACACACACATGCATACATACATACACTCATA
CCCACACACAAATCAACCAATAAATGTGAAAATTCAGACTATATCTAAGT
ATTTACTATACACTATAGTACTAATTATTAATATAGTACTACACCATATC
ACTAATTGCTATGTGCTTTATACTATATATAGTATTACAATTTACTATAT
CATGGCTGTACCATGGTTAAGGAAAGAGTGTAAGGCTTGTAGTCATCTGA
ACCAACAGCAAGCTGATCTGACCTGCCCACTTCTCTCTCATTTTTCCTGG
CAGAAAGCCATCCTCATGATCAAACAGCGCAGTAAAACACGTATGGGGAA
GGAACGCAGAAGCTCATGTGTTCATGAATCTTTTAGCATAATTTTACAAG
GGAAGAAGTGCTTTTCTCACCCGGACTGACCCAGAACAACACTCATAACC
CTGAAGAGATGTTATTCATCTTTATCCACATGTTGCTTCTAGCATTTATT
GGAGGCTTTTGGGTCTTTTCAAGGGTGTTTTTATAATGTAACTATTAAAA
CTCCTTTGCCCTCACTACCTTTATCTTCTTTTTCTTTGGTTTCTGTCCTT
CTTTTGGCTCCTTCTCGTTCCCCTCAATGGCCCTTTTGCGCCTACCCCTC
GTGTAACTTCTCCTTTCCCCCTGTTGCTTCCCCCTCTGTCCTACTTTTTC
ATTTCTCTCTCTCTTTACTTCTTTCTATTG
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATATGTAAATTAAAGACTGGGCT
TTTGCTATGCATGAGATGAGCTAAGCAGAAAGTGATAGCAATTTTCCAAT
TTTCTCTAGCAAGAGCTGAGCTGTCTAGAGATCTCTGGAGAGTGAAAACA
GCTCTTCAAGAGTTTTTTTTTTTTTCTTAAAAGGATTTCTACTTGGTGGA
AGATCTAATAATTTTTTTATAGCAGCTTTTCTGTTGGTTAGACAAACCAT
GAGCTATCCAGATAGCTTTTACAATTTTTACTAGCCGAGAGAGCTGTTTC
AAGCAGAGAGTTTTTTTTTAAATTAGGTATTTTCCTCATTTACATTTTCA
ATGCTATCCCAAAGGTCCCCCATACCCACCTCCTCCTTCCCTACCCAACC
ATTCCTCCTTTTTGGTCCTGGATGTTCTCTGTTATGGGGCATATTATGTT
TACCATTCTCCTTGTTTTTTTCTTTGTATTTATTGTTCGATAATGCCCTT
TTTTTCTTTCCTTTCATTTTTTTGATTTCAATATCCCTCTATTATTTCTT
CTCTCTTTTTCCTGCTTTTCTGCCTCCATTTTCCTTTCCCCTCTCTATTT
TATTCTCCCTCCTCTATATTTACATTAACTTTCTTTTTTACTTTTTTTTC
TCCTTAGCTTTATTTTCTCTTTCTAAATTTCTCCTTCTTTTTTTTCCCCC
CCTTTTTCTTTCTATTTCTTTTTTATTTTGTTCCCTCATATTACATCTCT
CTTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_g06.g1 MSMg01no457_g06.g1 CHROMAT_FILE:
MSMg01no457_g06.g1 PHD_FILE: MSMg01no457_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:34 2005
         (353 letters)



>mm_chr18_44302151_44302903
          Length = 753

 Score =  659 bits (341), Expect = 0.0
 Identities = 353/363 (97%), Gaps = 10/363 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgtaaattaaagactgggcttttgctatgcatgagatgagctaagcagaaagtgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atatgtaaattaaagactgggcttttgctatgcatgagatgagctaagcagaaagtgata 250

                                                                       
Query: 61  gcaattttccaattttctctagcaagagctgagctgtctagagatctctggagagtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gcaattttccaattttctctagcaagagctgagctgtctagagatctctggagagtgaaa 310

                                                                       
Query: 121 acagctcttcaagagttttttttttttt----------cttaaaaggatttctacttggt 170
           ||||||||||||||||||||||||||||          ||||||||||||||||||||||
Sbjct: 311 acagctcttcaagagtttttttttttttttttttttttcttaaaaggatttctacttggt 370

                                                                       
Query: 171 ggaagatctaataatttttttatagcagcttttctgttggttagacaaaccatgagctat 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggaagatctaataatttttttatagcagcttttctgttggttagacaaaccatgagctat 430

                                                                       
Query: 231 ccagatagcttttacaatttttactagccgagagagctgtttcaagcagagagttttttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccagatagcttttacaatttttactagccgagagagctgtttcaagcagagagttttttt 490

                                                                       
Query: 291 ttaaattaggtattttcctcatttacattttcaatgctatcccaaaggtcccccataccc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttaaattaggtattttcctcatttacattttcaatgctatcccaaaggtcccccataccc 550

              
Query: 351 acc 353
           |||
Sbjct: 551 acc 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)