BAC Information

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BAC

Clone NameMSMg01-457M10
Chromosome18 (Build37)
Map Location 19,636,709 - 19,636,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624
Downstream geneLOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M10.T7 (MSMg01no457_m10.b1)MSMg01-457M10.TJ (MSMg01no457_m10.g1)
ACCAG543762AG543763
length879790
length of high quality
(start - end)
178 (76 - 253)181 (76 - 256)
definitionCHROMAT_FILE: MSMg01no457_m10.b1 PHD_FILE: MSMg01no457_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:07 2005CHROMAT_FILE: MSMg01no457_m10.g1 PHD_FILE: MSMg01no457_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGACATCCG
CGGAATTCTTTCTCTTTGCTCTAGAACCTTTTCCAATTTTTATATAATAG
TTTTGTCTAATCTTATTATATTTTATCCTTGTTAAATTTGGTTCTTATCT
CTTAGAAGCCTGCTCTTTTCTAATGAGAGACAGAAATGGAGTACAAGGGG
AAGCAACTGTGAGGAGTAAAGGGAGGGGAAACTATAATCAGTATATATTG
TTTGTTTTTTTAATGTATTTTCAATATAATAAAATAATAACAACGGGTCA
TTGAAATACACACAGAACATCTTGCATCCGTTAGAGACGACCCCAGCGAC
CACAGATTGGCTGATTTTTTTCCCCCCCCATCTCGTTCGGGTGAGTTCCT
TGTATTGAAGATTTCATGTTTTTATCACCTCCACCCCCTTTTTATTTTTT
ATCTATTTCTGTCTCTTTTGCTGCCGTTTTCTCTTTTTTCTCTTTTTCCT
TTCTTTTATATTTTATCATTCCTTTATACTTCTCTCTCTTCTGCATCTAA
TCCTACTCTTTCTAACCCCCTTTTTCTCTCCTTCTTCTTTCTTTCCCTTC
TCCTTTCTTCCCCCCCCTCTTTCCTTTTATTTATCCTTTCTTTATATCTT
TTTTTCTTCCCTCGTTACCTCTTCCTTTTTCCCCTTTACTTTCTACCTAC
CGTTCTTTTCTCATCATCTTTTTTCAACTCTTACTATTTTTCTTTTTTCT
TTTTTTATGACTCTAAATCACCCCTTTCTCCTCCCTACTGCCCCTCCTTA
TTTATCCTTTACCCCGTTTTATTCTCACCTCTCTTCCCTCACCATTACCT
TCTTTTCCGTCCCTTTCTTACCTCTATTT
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGAATGGAATAATGACAAAGAC
AAAGGGAATGGACTCAACTAGGGAACGTAAACAGGAGCATAAAACTCAGG
ATGGGCTCTGTTGACTAACAACTGCTTCTCCTGCTCTTCCCACTATGGTG
GTAGAAAATTGAAACAGACATAGATGCATTTTTTTTTTTGCTTTCATTTA
GGATTTTTTCTGNAAGAAATAATATATGTTGCATGCTGAATGCTTCTATT
ATCCCCACCCCAAAATCCTGTTAAATANTTTTACATACACATTCTAATCC
CAATGTAATTTTTTTTGCCCCCCGCCGCTTCTGGAAGGTAATTTAGGTCA
TTGGTGTAATTTTTTTTCCCCCCCTTTTTTTATTTTAATTACTTCTTTTG
TACCCTCCGTGTTACTTCTTCCTTTTTTTTCTCTTCTTGTTTTTTATTTC
TTTATCTCTTTATTTGATTCCTTCTTTCCTATTTTTTTATTTTCTTCTTT
TTTTTTACTTAGTCTTCTCTTTTTTCCGTTTCTTATTTCCTTTCTTTACT
TTACCCCTTTTTCCTCATTTTCTTCTCACTTTTTTCTTCCCTTTTCTTCT
TTATTTCCTCCTTTTTTTTTCCACCTCCCATCCCCTCACTTTTTTTTTTT
TTTCACCACGTCCCCCACACCCTTTTCTCCCGTATTTCCCTTCCAGTTTT
TTTTTCTTTTTTCCTTTTTCCCGCGGTCATAACCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m10.g1 MSMg01no457_m10.g1 CHROMAT_FILE:
MSMg01no457_m10.g1 PHD_FILE: MSMg01no457_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:07 2005
         (181 letters)



>mm_chr18_19636509_19637085
          Length = 577

 Score =  282 bits (146), Expect = 6e-81
 Identities = 169/178 (94%), Gaps = 4/178 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagaatggaataatgacaaagacaaagggaatggactcaactagggaacgtaaacagg 60
           ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 374 tgtagaatgaaataatgacaaagacaaagggaatggactcaacaagggaa-gtaaacagg 316

                                                                       
Query: 61  agcataaaactcaggatgggctctgttgactaacaactgcttctcctgctcttcccacta 120
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 315 agcataaaactcaggatgggctctgttgactaacaactacttctactgctcttcccacta 256

                                                                     
Query: 121 tggtggtagaaaattgaaacagacatagatgcatttttttttttgctttcatttagga 178
           ||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||
Sbjct: 255 tggtggtagaaaattgaaatagacatagatgcatttttttt---gctttcatttagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 577
Length adjustment: 8
Effective length of query: 173
Effective length of database: 569
Effective search space:    98437
Effective search space used:    98437
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)