BAC Information

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BAC

Clone NameMSMg01-458A12
Chromosome18 (Build37)
Map Location 16,966,440 - 16,966,673
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneLOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458A12.T7 (MSMg01no458_a12.b1)MSMg01-458A12.TJ (MSMg01no458_a12.g1)
ACCAG543956AG543957
length729745
length of high quality
(start - end)
198 (384 - 581)237 (75 - 311)
definitionCHROMAT_FILE: MSMg01no458_a12.b1 PHD_FILE: MSMg01no458_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:29 2005CHROMAT_FILE: MSMg01no458_a12.g1 PHD_FILE: MSMg01no458_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACATTGTCTACTGTAGCNNNNNNNNNNNTTTTCATAACAGCGCGGAAN
NANGANAGTTGACAACACAGACGTCACCCCTATTGACTAGTGTTAATGGT
ACTGAAAGGTACTCTTCAGCCCACTGAGAAGAAAGGTAAACACCAACCCT
TCTACACCCTTTGCTCTACAATGGCTGCCCTTCTGCAAGGTATAAACTGA
TCTTTAATCTCTTTGTTATGCTGGTGCAATAATGAAGCAACTTTGTGGTA
TAGAATAACCACTCGCTCTCCTATTGTATTTAAGGCCCACTTTATGAGAC
AGCAAAATCCATGCTTTTTTCTGCTCAGGTGCCTAAGAACCTGATACTAG
ATAGAGCAACAACTTACGGGAAATGGACATAGTATGGCTCCACTAAAGTG
ACAAAATAACAAAATGATTTTTATGAGCATTCTCCTACATACATAGGTCA
ATATCTTGCTTAGCCATAATCAAAGAGGCCTCCTGTTGAAGTGGATGGAA
ACTACTACAAAACCTCACAACTTGACAATGTGCACAGACTGAGAAATGAA
ATCAAAATCTTCCTCTCTGGGCTCAAGAAACTGAGAGGAAAAGAAGGTGA
AAAGATTGTAAGAGCCATAGGGGATGAAGAATACGAAGAAAGCTGCCTTC
CAGCCACTACAGACAGATGAACTCATGAGCTCCCAGGGACTATAAAAAAC
AGCATGGCCTACACAAGTTCAAAGTGGGC
CGATGCTAGGGTAGCCTGGGGGCGCCTGGTACCTATCTCGGGNGAANNAN
AGAAGTACCANTAACCTCCTAGNACAAACTCGCGACCCCTCCCTGAAGGA
AAAAACAAAATTTACACCCAAACAAAAAAATCGGATCAAAGTACAATATG
NAGGGAGCGAGAAGCACAGAAAACTACAAAACCTAGGAGTTCTCCTGCCT
CATCCTTCTGCTGCTTGGGGACATCCCTCGAGCTCGCCTTGACCCTTTTT
TGAAGCCAAGGAGATCCTGTGATCGAGGCTCGCCGAAGAAGGCGCGGTAG
AGAAGCTGGTCCGTGATCCTTTCCGAGCTTCACGCCTGGGCAGNTTCTCG
GTCGCGCGCCGCGGCACCTCCCTTCGTGGGTGCTCAGCCGGGCCCCGCAG
CGGCGCGGGGAACAAAGGGACCCGGCGCCGCACGCCCCACCCCGCTCGCA
GCCCGACCCACCCGGGACCTCCGCTTACCTGAAGCAAGGCCGCCAGAAGC
GGCAGCAGGGTCCGCGGCGCTCCCGCTATCCGGCACATGGAGGCGGAGAG
GTGCCGAGCGAGGAGCCGGATGCGGCGGCGGCGGCAGCAGAGGCAGCATA
AGCGGCCGCGCCCCCTACCAGTAGTGCGGAGATGTTTCCGGGCAGTGTTT
TTTTTTTTCTTTTTCCCCCCCCTCTCCAGCTCCCTCTTTGCTGCTTTGCT
GCTCCCCGTTTATGTGATTCGAGCTGTTTTCTAACCATGTTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_a12.g1 MSMg01no458_a12.g1 CHROMAT_FILE:
MSMg01no458_a12.g1 PHD_FILE: MSMg01no458_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:30 2005
         (237 letters)



>mm_chr18_16966240_16966875
          Length = 636

 Score =  373 bits (193), Expect = e-108
 Identities = 224/241 (92%), Gaps = 13/241 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactcgcgacccctccctgaaggaaaaaacaaaatttacacccaaacaaaaaaatcgg 60
           |||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||||
Sbjct: 201 caaactcgcgacccctccctgaaggaaaaaacaaaataaacaaacaaacaaaaaaatcgg 260

                                                                       
Query: 61  atcaaagtacaatatgnagggagcgagaagcacagaaaactacaaaacctaggagttctc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaaagtacaatatg-agggagcgagaagcacagaaaactacaaaacctaggagttctc 319

                                                                       
Query: 121 ctgcctcatccttctgctgcttggggacatccctcgagctcgccttgaccctttttt--- 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 320 ctgcctcatccttctgctgcttggggacatccctcgagctcgccttgaccc------aaa 373

                                                                       
Query: 178 ---gaagccaaggagatcctgtgatcgaggctcgccgaagaaggcgcggtagagaagctg 234
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggcgaagccaaggagatcctgtgatcgaggctcgccgaagaaggcgcggtagagaagctg 433

            
Query: 235 g 235
           |
Sbjct: 434 g 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space:   142956
Effective search space used:   142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)