BAC Information

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BAC

Clone NameMSMg01-458C06
Chromosome18 (Build37)
Map Location 68,684,515 - 68,684,749
singlet/doubletsinglet
Overlap genenone
Upstream geneSpire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458C06.T7 (MSMg01no458_c06.b1)MSMg01-458C06.TJ (MSMg01no458_c06.g1)
ACCAG544040AG544041
length744786
length of high quality
(start - end)
237 (93 - 329)163 (84 - 246)
definitionCHROMAT_FILE: MSMg01no458_c06.b1 PHD_FILE: MSMg01no458_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:38 2005CHROMAT_FILE: MSMg01no458_c06.g1 PHD_FILE: MSMg01no458_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTCTCTTCXXXXXXXXXXXXXXXXXXAGAGTCACATATTTCGGACTCC
GCGGNAATCTCTGCTGATTTCCACTACACCCTGNGGCATGGAATATAAAT
GTAATCAAATAAAATTACTATGTACAGCCCATAATAAGAGTGTCAAGTAA
TAAGACCACATAGAAATAGGTTTCTGGATGTGAAATCTATTTATTTATGC
TTTGTTACCTTAAGATGTGAAGCAAATGTGACCTAGTAATGAGATTTTAA
GAAAGGATAATGTTATACTATCTTAAGAAATGGATGGAAAGCCTTTTGTA
TTAAGAGTTTTTAAAAAATCTCAAGTTTTTTTTTCTGGAGAGATGGCTCA
GAGGCTAATAGCACTTGTCGTCCTGCCAGAAGACCAGGGTTTCGTTCTCA
GCAGTTACTATTGGTTTCCTACTGCCTGTAAATCCAGTTTCCAGGGTGAC
CCCAGGGTCCTTCTTTCTCACCTTTCTTGGGGGATCCCGCCAAACTTTTC
CTCTATAACTAAGAGGGGGAAGCACCTACCAAATATGGGGGGGGGTATTG
GATAACCTATTAGTTAAGAGGGTTTTAAAAAGAAGAGAAGATGGGAATAA
CTCCCCCCCCGGGCCTCAAAGATTTATAAAGCTTCTCCCTTTTTTCCCCC
TTTTCCCGCTTTTATAAACGGGTGGAATATCCGTTAACCCATAAACCCTC
CTTTCTTTTTTTTTTCCTCCCTTATATTTTTGTATATTGGAAAN
CCATTGGATTGGGAATGGCGGGCGGACGCCTGGTTTCACACCTGAGGNNG
AACNANAGAAGGTTACGAAAACACCTTTAGGNGCCATTTTGTATTCCTCA
GTTGAGAATTCTCTGTTTATCTCTGTTCCCCCCCCCTTTTTTTTTTTCGA
GCAGGGTTTCTCTTTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAA
CAGGCTGGTCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGCGCT
GGGTTTTAAGGAGTGTGCCTCCACGCCCGGCTTCTGTTCCCCATTTTTAA
ATAGGGTTATTTGGTTCTCTGTGAGTCCTTTTTCTTGAGTTCTTTGTATA
TATTGGACAATAGCCCTCTATTGGATGTAGGGTTGGTTAAGATCTTTTCC
TAGTCTGTTGCTTGTTGTCTCGTTCTATTGTCTATGTCTCTTTGCTTTAC
CGATATTTTTCTATTTTATGAATCTCCCTTTGCCACTTCTTGATCTTTCA
GCATAAACTCATAGTTGTTTCTGCCTATACTCTTTTTCCCCCGTTTCATC
TGCGTTCTGAGACTTCTTCCTGCCCTCTCTTTCCCATAACTATCCTTTGT
ATTCCCTCTTCTTTTTCCCTCTTCCTCCTTTCTTTTTTTTTTATTTATTC
TTTTCGTCAAATCTTTTCGAATCTATCGCTTTCTTTTTTTTTTCTTCTTT
CACACCCCCAGTTATACCTCTCTTCCCATTTTCCCTTATTCTCCTTCTGA
TTCATTTGCTTCTGTCCTCTCTCGTCTGTTCCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_c06.b1 MSMg01no458_c06.b1 CHROMAT_FILE:
MSMg01no458_c06.b1 PHD_FILE: MSMg01no458_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:38 2005
         (237 letters)



>mm_chr18_68684315_68684952
          Length = 638

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataaatgtaatcaaataaaattactatgtacagcccataataagagtgtcaagtaata 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 435 atataaatgtaatcaaataaaattactatgtacagccaataataagagtgtcaagtaata 376

                                                                       
Query: 61  agaccacatagaa-ataggtttctggatgtgaaatctatttatttatgctttgttacctt 119
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 375 agaccacatagaacataggtttctggaggtgaaatctatttatttatgctttgttacctt 316

                                                                       
Query: 120 aagatgtgaagcaaatgtgacctagtaatgagattttaagaaaggataatgttatactat 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 aagatgtgaagcaaatgtgacctagtaatgagattttaagaaaggaaaatgttatactat 256

                                                                  
Query: 180 cttaagaaatggatggaaagccttttgtattaagagtttttaaaaaatctcaagt 234
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 255 cttaagaaatggatggaaagccttttgtattaagagttttaaaaaaatctcaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space:   143412
Effective search space used:   143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)