BAC Information

Click to search

BAC

Clone NameMSMg01-458C09
Chromosome18 (Build37)
Map Location 71,676,702 - 71,677,177
singlet/doubletsinglet
Overlap geneDcc
Upstream genePoli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458C09.T7 (MSMg01no458_c09.b1)MSMg01-458C09.TJ (MSMg01no458_c09.g1)
ACCAG544046AG544047
length744769
length of high quality
(start - end)
476 (81 - 556)237 (84 - 320)
definitionCHROMAT_FILE: MSMg01no458_c09.b1 PHD_FILE: MSMg01no458_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:39 2005CHROMAT_FILE: MSMg01no458_c09.g1 PHD_FILE: MSMg01no458_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATTCAATAACAG
CGCGGAATTCAAACAAATGACAGACAGGCAAAATCTGCAATTGGAAAGGT
GACTGCTCTCCATTCTCAAGGCTGATGTTCATCAAAAGAAACTTACTCTC
TGTCCTATGCTATACCCACTCTTACTTAGCCTTGAGTAAAAGAGAACAGA
AAAGCAATAAACAAAAACAAACAAAACAAGCAAACACAACCCCCCAAATC
TATTATTATGTATTTTCTACTCTTAGAGTTGCATACACCAACTCTAGGAA
AGGAGAGACCCAAGAAAATAGGAACTGATTTTTCAAAATTTCTTTCTGTT
CTACCATTTTGCCCATCTTCATAACCAAACAAGGGTAAGCACTTTGTACC
TTTCTTCCTTGTCAATTATTAATATTCTCTGTACTCAGCCTTTTGAGCTC
TTGTTAAGGAGGCCAAAGAACATGGGTAAATTGGTCTAATAAACAGTGAG
TGAGCTCACCTAGCAGAGTTGGCCATAAAGATGCACCTACAGTGAGGGCC
ATGGTGGATTGTGTCCGTGGGCATTTGAATTGGCATTTTTATATTGTTAT
CAAGAACACTTGAGAGCTTATAATAAAATCTATTTCCAGGGACAAAAGAC
ATGTGGTTGGTTTGTCTTGATTTCTCTGAAAGAGTGAAGTGGCTACCAAA
ATTCCAGATAAGCAAACCTAATTTTTATTTTTCTAAAGCAATAN
CCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAAGAAAACTGCTCCACAA
CCAGTTCCACGGATGACAAAGGGAATTATGAGAAGCTGCTGTCACAGATT
CAATCACAGCTAAGGTACCAATTTGATATCTGCAGAAGCTGAGTGGACAG
TAGATAAGAAAGTTCATGTGGATTCTGGGAAGGGATAACGATGGAGATAC
AACTTAGGATCATCAGCATTTACATTGTCTAATGGCCATGGATGTTATCT
CAGTGGTTACTGTCATGGATTTTTTCAGCTGCCCTAAGAAGGAGCCCTAG
CTCACTCTGAGTCTTGGAAGTCAAGAAGGAGAAGAAGGATGGTGAACAGG
AACAGTCTATGGTAAGGAGAAGAGAAAGTAGTCAACATGTTGCAAATCAA
GGGGGAAAGCTTCTCTCTATGTCTCTGTCTCTCTCTCCCTCTCTGTGTGG
ATACGTGTGTGTGTGTGTGTGCGCGTGTGTGCGCTTCTCCCCCCTTCCCC
CCTTCCTACTACATTTTCCATTCCCTTTTACTTCCTATCCCTTCCCCTCC
TACCTATTTCCCCTTTCTTCCTTTTCTTTCTTTCCTCTCCTCTTCCTCTC
TCCTCTTATCTCCCTCCTTCTCTCCTTTATCCTCCCAATCGCCCCCCTAT
TTATTTTCCCTTATCTCTCTTTTTTTCTTACCCCTTTCCTTTCCCTTTTT
TTCTCCCTTCCCCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_c09.b1 MSMg01no458_c09.b1 CHROMAT_FILE:
MSMg01no458_c09.b1 PHD_FILE: MSMg01no458_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:39 2005
         (476 letters)



>mm_chr18_71676502_71677377
          Length = 876

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatctgcaattggaaaggtgactgctctccattctcaaggctgatgttcatcaaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaatctgcaattggaaaggtgactgctctccattctcaaggctgatgttcatcaaaagaa 617

                                                                       
Query: 61  acttactctctgtcctatgctatacccactcttacttagccttgagtaaaagagaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acttactctctgtcctatgctatacccactcttacttagccttgagtaaaagagaacaga 557

                                                                       
Query: 121 aaagcaataaacaaaaacaaacaaaacaagcaaacacaaccccccaaatctattattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaagcaataaacaaaaacaaacaaaacaagcaaacacaaccccccaaatctattattatg 497

                                                                       
Query: 181 tattttctactcttagagttgcatacaccaactctaggaaaggagagacccaagaaaata 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 496 tattttctactcttagagttgcatacaccaactctacgaaaggagagacctaagaaaata 437

                                                                       
Query: 241 ggaactgatttttcaaaatttctttctgttctaccattttgcccatcttcataaccaaac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggaactgacttttcaaaatttctttctgttctaccattttgcccatcttcataaccaaac 377

                                                                       
Query: 301 aagggtaagcactttgtacctttcttccttgtcaattattaatattctctgtactcagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagggtaagcactttgtacctttcttccttgtcaattattaatattctctgtactcagcc 317

                                                                       
Query: 361 ttttgagctcttgttaaggaggccaaagaacatgggtaaattggtctaataaacagtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttttgagctcttgttaaggaggccaaagaacatgggtaaattggtctaataaacagtgag 257

                                                                   
Query: 421 tgagctcacctagcagagttggccataaagatgcacctacagtgagggccatggtg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgagctcacctagcagagttggccataaagatgcacctacagtgagggccatggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)