Query= MSMg01no458_c21.b1 MSMg01no458_c21.b1 CHROMAT_FILE:
MSMg01no458_c21.b1 PHD_FILE: MSMg01no458_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:41 2005
(548 letters)
>mm_chr18_42420892_42421839
Length = 948
Score = 843 bits (436), Expect = 0.0
Identities = 466/478 (97%), Gaps = 4/478 (0%)
Strand = Plus / Minus
Query: 1 gtttttaataaatatagaggtaaagaagaaagaacatttaacgtttcaagaacagcaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtttttaataaatatagaggtaaagaagaaagaacatttaacgtttcaagaacagcaaga 419
Query: 61 atcgggcttctcactgtgaatatgtttagtgcccccgaagcactgacttaaatatagccc 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atcgggcttctcaccgtgaatatgtttagtgcccccgaagcactgacttaaatatagccc 359
Query: 121 taatttaaaattaagcagctgggccctgtcgtacacatcttgtaatctgagctactttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 taatttaaaattaagcagctgggccctgtcgtacacatcttgtaatctgagctactttag 299
Query: 181 agactgaagtaagaggactgaaaatgaaaggtttgcttggactactgaatgagtttagaa 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 298 agactgaagtaagaggactgaaaatgaaaggtttgcgtggactactgaatgagtttagaa 239
Query: 241 caaaaccgaatattttataagtgagaagggatcgggaaggccggagagatggctcagtgg 300
|||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 238 caaaaccgaatacataagaagtgagaagggattgggaaggccggagagatggctcagtgg 179
Query: 301 ttaagagcactgactgcttttccagaggtcctgagttcatttcccagcaaccacatggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttaagagcactgactgcttttccagaggtcctgagttcatttcccagcaaccacatggtg 119
Query: 361 gctcgcaaccatctgtaatgggcatccaatgccctcttctgctgtgtctgaagacagtga 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gcttgcaaccatctgtaatgggcatccaatgccctcttctgctgtgtctgaagacagtga 59
Query: 421 cagtgtactcacatacatg----aaataaataaataaacaaacaaacgaacacaccaa 474
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 58 cagtgtactcacatacatgaaataaataaataaataaacaaacaaacgaacacaccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_c21.g1 MSMg01no458_c21.g1 CHROMAT_FILE:
MSMg01no458_c21.g1 PHD_FILE: MSMg01no458_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:41 2005
(174 letters)
>mm_chr18_42225710_42226283
Length = 574
Score = 226 bits (117), Expect = 5e-64
Identities = 126/129 (97%)
Strand = Plus / Plus
Query: 5 ggatcgagaaaatccaaggcatttgtctctgtgcttaaaggaaggtggaacccagtgaga 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggatcaagaaaatccaaggcatttgtctctgtgcttaaaggaaggtggaacccagtgaga 264
Query: 65 gggtggaaggagacgccagcgctgcctccccccagcgctgcctccccccagcgctgcctc 124
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 265 gggtggaaggagacgccagcgctgcctccccctagcgctgcctccccccagcactgcctc 324
Query: 125 cccccagcg 133
|||||||||
Sbjct: 325 cccccagcg 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space: 93956
Effective search space used: 93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
