BAC Information

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BAC

Clone NameMSMg01-458K16
Chromosome18 (Build37)
Map Location 41,484,879 - 41,485,117
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd16, EG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458K16.T7 (MSMg01no458_k16.b1)MSMg01-458K16.TJ (MSMg01no458_k16.g1)
ACCAG544442AG544443
length752803
length of high quality
(start - end)
239 (90 - 328)216 (73 - 288)
definitionCHROMAT_FILE: MSMg01no458_k16.b1 PHD_FILE: MSMg01no458_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:20 2005CHROMAT_FILE: MSMg01no458_k16.g1 PHD_FILE: MSMg01no458_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGAGCAAATCAAAATTTGCGGGCGCTAAACGAANCACTAATTTTCAAAA
GAGGGCGGAATTCATCATATTTTCATTAAATTTAGCAGNGAATATGGCTT
TCTTACATTTACTGAAAAGTCTGGACCATAACCATCAAGGTACTAGCTAA
GAAAATCCAAGAGGAAACATTTTTCATGGAGAAGAAATATTCATAAGAAA
GGCCATTGCGTTGTTTTAAATACCCAAAATGGCACTGTGGTTCTGAAATG
TCTAAAGAAAAGCTACACTGCAGAGAAATGTATTTCTCAAGCTTCCCTCC
CGAGGACAATAAATATGAAAGAACAATGCTCTTTTTGGAGCTCTGTTCAT
TTTGGGAAAAAAATAGTTATTCCTTACTAAAAGAATAAAATACAAACAAA
CCCACAAAATGTATATATATATATATGCGCATATATATATGTGTGTGTGT
GCCCNCCCCCCCCCCCCCCTCTCTCCCTCCCCCTTTCTCCTTTCTTCCTT
CTTTTCTTCCCCCCTCCCCTTCCTCCCTTCCCTCCCCTCTCCCCTTCTTT
TCCCTTTTTTTTCTCTTTTTCCTCCTCTTCTTCTCCTCTCCTTTTTTCTC
CCTTCTCTCTTTTTTCTCCTCTCTTTTCTTCTTCTTCTCCCTCTTCCNCC
CTCTTTCTCTCCTCCTTTTCTTTTTTTTTTTCTTTCTCCCTCTTCTCCTT
TTTTTTTTTTTTCCCTCTCTCTCTTTTTCTCTCTTTTTTCTCCTCTCTTT
CC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTTAGCTAAGGACATTCTGCCTTTTG
TGAAAACATGCATGGCAGGGAACCTGGAGGGTACTCTCTTGAATGAAATA
GACCAGACTTAGAAAGATGAAAATCACAAGATTTCCCTCATATGAGAAAC
CTTTAAACACTGACCACTGAGAAGCAGCCAGTAGATTGCTAACTTTCAGG
GCACAGAGGTGGCGGGGTAGGGGGGGTGAGGGGTGNTNNNNNTNNCTTTT
TTTNNNTNNNNNNTTTTTTTTTTTTTTNCNNNNNNNNNTNNNNNNNNANN
NNNNTTTTTTTTCCCCCCTCCCCTTCTTGCCCGTTTCTTTCTCTTTCTCT
CTTTTTTTTTGCCCCCCTTTTCTCTTTTTCTTCCTTTTTTCTTTTCTTCT
TCTCTTTCTCTTTTCGTCTTTCCTTCCGTCGCTGTCCGCTTTTTCCCTTC
CTTGTCGCGTCCTGCTTTTCTTCTGTGCGCTGCTTCTCTTTGTCGCCCCT
TTCTGCTGGCTTTTTTTTTTGTCTTTCTTGCCCCTTCCTTTTCTTGTTCT
TTGCTTTTTTCTTTCCTTGCTTTTTCTCTCTTTCTCCTCCTTTCTTGTGT
TTCTCTTTGTGCCTCGCCCGCTTTTTTTTTTTTTGTNCTTCCTGTTTTCC
TGTCTTCTCTTTTTGTCTTCCGCCTTCTTTTCCGTTTTTTCCTTTTCTAT
CTTTTTTTCCCTTCTTCTTCCCTTCTTTTTTTCCCTTCGTCTATTTTTTT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_k16.b1 MSMg01no458_k16.b1 CHROMAT_FILE:
MSMg01no458_k16.b1 PHD_FILE: MSMg01no458_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:20 2005
         (239 letters)



>mm_chr18_41484679_41485317
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatatggctttcttacatttactgaaaagtctggaccataaccatcaaggtactagcta 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 gaatatggctttcttacatttactgaaaagtctggaccataaatatcaaggtactagcta 260

                                                                       
Query: 61  agaaaatccaagaggaaacatttttcatggagaagaaatattcataagaaaggccattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaatccaagaggaaacatttttcatggagaagaaatattcataagaaaggccattgc 320

                                                                       
Query: 121 gttgttttaaatacccaaaatggcactgtggttctgaaatgtctaaagaaaagctacact 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgttttaaatacccaaaatggcactgtggttctgaaatgtctaaagaaaagctacact 380

                                                                      
Query: 181 gcagagaaatgtatttctcaagcttccctcccgaggacaataaatatgaaagaacaatg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagagaaatgtatttctcaagcttccctcccgaggacaataaatatgaaagaacaatg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)