BAC Information

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BAC

Clone NameMSMg01-458L13
Chromosome18 (Build37)
Map Location 19,661,364 - 19,661,616
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624
Downstream geneLOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458L13.T7 (MSMg01no458_l13.b1)MSMg01-458L13.TJ (MSMg01no458_l13.g1)
ACCAG544484AG544485
length730712
length of high quality
(start - end)
316 (336 - 651)253 (376 - 628)
definitionCHROMAT_FILE: MSMg01no458_l13.b1 PHD_FILE: MSMg01no458_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:24 2005CHROMAT_FILE: MSMg01no458_l13.g1 PHD_FILE: MSMg01no458_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTCTCAAAAATTGCGGCCGCTAATAGAATCACATTTTCAGAACAG
GGCNGGAATCTCACCTGATGACTAAAAAATGGCTCAGAAGCACCTGAAAA
AATGCTCAGCATCCTTAATCATCATAGAAACGCAAATCAAAACAACCCTG
AGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGTATGCTTGAACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTAAGAAAATTGGACATAGTACTACTGTAGTANTTCGCAATACCTCTCCT
GATCATATATCCAGAAGATGTCCCAACTGGTAAGAAAAACACATGATCCA
CTATGTTCATTGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCTTCAACAGAGGAATGGATACAAATAATGTGGTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCGTAG
GCAAATGGATGGACCTAGAGGGCATCATCCTGAGTGAGGTAACACAATCA
CAAAAGAACTCACATGATATGTACACACTGATAAGTGGATATTAGCCCAG
AAACTTAGTATACCCGATATATTATATACAGNTTGCAAAACACATGATAC
TGAAGAAGAACGAAGACCANAATATGGACN
NAATTCTCGATGATAGNGGAGGCCTGGNGGNCGCCCTTTTCAAACTTTTA
GGTGAACTATAGAATGTCAAAAAAACATTCTTATTGAGTTGTATAACTCA
ATTCTCTTCATGTTGAATTTTTAATAAATACTTTATGGGATCTCATCTGT
GTAAACTTGAATGTAAAATGGTTTCAGTATGTCTTGACTGTTTTTTTTTT
CTTACATAGTCAACTTTTAAGAATAGTTCCCTATAACTGTACCTGCAGAA
TGTCTTATTGTATGCATGCCTCATCACTGTGCACATGTCCACATTTCACA
CAAGAATGAATTTTCTTTTTTTCTTANCATATTCTTTATAGTTCTTGACA
TAATGTAATAATTTCTAATAAAATAGAAGTACTCTTTTTAAATATCCCAT
TTTTGGCTTGCTGCGTGTAACAGGCAGTGATGTAAAAACAGCAGTAGACA
TTTTTTATGTCAAAATGATACCTTTAGTTTTGAGGTAATAGTTATGTTTT
GCTCATTGCCCTGATTTATGTTTCCCCTGCAACCTACTGAATTATGATCC
CTATATTGATGTGATTGCTGGTGTTTAACATTGAAACACATTCACCGTGA
GTCATTTGAGGGAAAATGGGCATGAGAAGCTAGAGCAGAAACCTATGTTT
TCAATATTCTTAATGTAAATGGGTTATATCAAAAAGCACGCTCTCATTCA
CTTACAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_l13.g1 MSMg01no458_l13.g1 CHROMAT_FILE:
MSMg01no458_l13.g1 PHD_FILE: MSMg01no458_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:24 2005
         (253 letters)



>mm_chr18_19661164_19661816
          Length = 653

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagtactctttttaaatatcccatttttggcttgctgcgtgtaacaggcagtgatgtaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaagtactctttctaaatatcccatttttggcttgctgcgtgtaacaggcagtgatgtaa 394

                                                                       
Query: 61  aaacagcagtagacattttttatgtcaaaatgatacctttagttttgaggtaatagttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaacagcagtagacattttttatgtcaaaatgatacctttagttttgaggtaatagttat 334

                                                                       
Query: 121 gttttgctcattgccctgatttatgtttcccctgcaacctactgaattatgatccctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttttgctcattgccctgatttatgtttcccctgcaacctactgaattatgatccctata 274

                                                                       
Query: 181 ttgatgtgattgctggtgtttaacattgaaacacattcaccgtgagtcatttgagggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgatgtgattgctggtgtttaacattgaaacacattcaccgtgagtcatttgagggaaa 214

                        
Query: 241 atgggcatgagaa 253
           |||||||||||||
Sbjct: 213 atgggcatgagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)