MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-459E16
Chromosome	18 (Build37)
Map Location	76,933,821 - 76,934,238
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Zbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
Downstream gene	EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Zbtb7c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207259 MGI:2443302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4833419G08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74842 MGI:1922092
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC668184 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668184
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	Smad2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17126 MGI:108051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668188 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668188
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	EG639576 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639576 MGI:3644751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins

name	EG664805 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664805 MGI:3645984
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins

name	LOC620139 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620139
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins

name	Ier3ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66191 MGI:1913441
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdhd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Katnal2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71206 MGI:1924234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pias2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17344 MGI:1096566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG639653 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639653 MGI:3646549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	St8sia5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225742 MGI:109243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Loxhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240411 MGI:1914609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 1 Protein

name	Rnf165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225743 MGI:2444521
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 83 ESTs, 1 Protein

name	8030462N17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212163 MGI:2444951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb7c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47271528 GeneID:207259 MGI:2443302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 7C transcript_id : NM_145356.3

name	4833419G08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404523 GeneID:74842 MGI:1922092
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4833419G08 gene transcript_id : XM_994760.1

name	Smad2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368334 GeneID:17126 MGI:108051
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 2 (Drosophila) transcript_id : NM_010754.3

name	EG639576 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270187 GeneID:639576 MGI:3644751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins product : predicted gene, EG639576 transcript_id : XM_916065.3

name	EG664805 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270189 GeneID:664805 MGI:3645984
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins product : predicted gene, EG664805 transcript_id : XM_972803.2

name	LOC620139 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270191 GeneID:620139
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins product : similar to retinitis pigmentosa GTPase regulator interacting protein 1 transcript_id : XM_001472129.1

name	Ier3ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365900 GeneID:66191 MGI:1913441
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : immediate early response 3 interacting protein 1 transcript_id : NM_025409.2

name	Hdhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861227 GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 2 transcript_id : NM_029826.2

name	Hdhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861234 GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 2 transcript_id : NM_001039202.1

name	Hdhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861230 GeneID:76987 MGI:1924237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 2 transcript_id : NM_001039201.1

name	Katnal2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349930 GeneID:71206 MGI:1924234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : katanin p60 subunit A-like 2 transcript_id : NM_027721.2

name	Pias2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382362 GeneID:17344 MGI:1096566
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein inhibitor of activated STAT 2 transcript_id : NM_008602.3

name	EG639653 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383481 GeneID:639653 MGI:3646549
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG639653 transcript_id : NM_001039252.2

name	St8sia5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24233503 GeneID:225742 MGI:109243
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 transcript_id : NM_153124.1

name	Loxhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270193 GeneID:240411 MGI:1914609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 1 Protein product : lipoxygenase homology domains 1 transcript_id : XM_001472179.1

name	Rnf165 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270195 GeneID:225743 MGI:2444521
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 83 ESTs, 1 Protein product : ring finger protein 165 transcript_id : XM_129042.8

name	8030462N17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87196344 GeneID:212163 MGI:2444951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 8030462N17 gene transcript_id : NM_178670.3

name	4833419G08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404524 GeneID:74842 MGI:1922092
definition	codon_start : 1 product : hypothetical protein LOC74842 protein_id : XP_999854.1

name	Zbtb7c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703718 CCDS:CCDS29349.1 GeneID:207259 MGI:2443302
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 product : zinc finger and BTB domain containing 36 protein_id : NP_663331.1

name	Smad2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560568 CCDS:CCDS29350.1 GeneID:17126 MGI:108051
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003690 - double-stranded DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008134 - transcription factor binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0045165 - cell fate commitment [Evidence IMP]; GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IDA]; GO:0001707 - mesoderm formation [Evidence IMP]; GO:0048340 - paraxial mesoderm morphogenesis [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0051098 - regulation of binding [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007183 - SMAD protein heteromerization [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IDA] codon_start : 1 note : Smad 2 product : MAD homolog 2 protein_id : NP_034884.2

name	EG639576 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270188 GeneID:639576 MGI:3644751
definition	codon_start : 1 product : hypothetical protein protein_id : XP_921158.3

name	EG664805 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270190 GeneID:664805 MGI:3645984
definition	codon_start : 1 product : similar to functional smad suppressing element 18 protein_id : XP_977897.2

name	LOC620139 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270192 GeneID:620139
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472179.1

name	Ier3ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384796 GeneID:66191 MGI:1913441
definition	codon_start : 1 product : immediate early response 3 interacting protein 1 protein_id : NP_079685.1

name	Hdhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85861231 GeneID:76987 MGI:1924237
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 2 product : haloacid dehalogenase-like hydrolase domain containing 2 isoform 1 protein_id : NP_001034290.1

name	Hdhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313310 GeneID:76987 MGI:1924237
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : haloacid dehalogenase-like hydrolase domain containing 2 isoform 1 protein_id : NP_084102.1

name	Hdhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85861235 GeneID:76987 MGI:1924237
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 3 product : haloacid dehalogenase-like hydrolase domain containing 2 isoform 2 protein_id : NP_001034291.1

name	Katnal2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313044 GeneID:71206 MGI:1924234
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : katanin p60 subunit A-like 2 protein_id : NP_081997.1

name	Pias2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27532974 GeneID:17344 MGI:1096566
definition	GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IDA]; GO:0019789 - SUMO ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016925 - protein sumoylation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006351 - transcription, DNA-dependent [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : PIASxalpha6 product : Msx-interacting-zinc finger protein_id : NP_032628.2

name	EG639653 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986673 GeneID:639653 MGI:3646549
definition	codon_start : 1 product : hypothetical protein LOC639653 protein_id : NP_001034341.1

name	St8sia5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24233504 CCDS:CCDS29353.1 GeneID:225742 MGI:109243
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003828 - alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity [Evidence IDA]; GO:0008373 - sialyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform middle is encoded by transcript variant 2; sialyltransferase 8 (alpha-2, 8-sialyltransferase) E product : sialyltransferase 8E isoform middle protein_id : NP_694764.1

name	Loxhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270194 GeneID:240411 MGI:1914609
definition	codon_start : 1 product : lipoxygenase homology domains 1 protein_id : XP_001472229.1

name	Rnf165 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270196 GeneID:225743 MGI:2444521
definition	codon_start : 1 product : ring finger protein 165 protein_id : XP_129042.7

name	8030462N17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87196345 CCDS:CCDS29355.1 GeneID:212163 MGI:2444951
definition	codon_start : 1 product : hypothetical protein LOC212163 protein_id : NP_848785.2

name	LOC668188 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668188
definition	number : 1 pseudo : _no_value

name	LOC668188 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668188
definition	number : 2 pseudo : _no_value

name	LOC668188 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668188
definition	number : 3 pseudo : _no_value

name	LOC668188 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668188
definition	number : 4 pseudo : _no_value

name	LOC668184 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269869 GeneID:668184
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : similar to ribosomal protein L38 pseudo : _no_value transcript_id : XR_034710.1

clone name	MSMg01-166K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237I09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-459E16.T7 (MSMg01no459_e16.b1)	MSMg01-459E16.TJ (MSMg01no459_e16.g1)
ACC	AG544921	AG544922
length	787	796
length of high quality (start - end)	418 (67 - 484)	389 (71 - 459)
definition	CHROMAT_FILE: MSMg01no459_e16.b1 PHD_FILE: MSMg01no459_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:10 2005	CHROMAT_FILE: MSMg01no459_e16.g1 PHD_FILE: MSMg01no459_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:10 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATT CCAGTAGCCCCTGAGGGTGTTCCCCAGTCACCTGATTTCCTATCCCCAGG TCCGATTTCTTAAAAGTTCTCTCAGCACTCAAAAGCAATGCAGGCTGGGG CAAAGCCCTTAATACACAGGCCTCTGGGGAATACTTAAGATTTCCATTGC CTCACACACAACTAAAACAGATATGTACTCTAATCTCCCGACACAGTTCC TCACAGGAAACTCAGTCAAGTAAGTTCGCAAGCTGCTAAATAAGGAGTTA AATCCTGAGTCCAGATCGGTGAACGGGGTGTTCTCGGGGCCCCACACACT TCAGTAAAGTTAGAGTTAATGGCTCATAGGTACTTCTGTGGTTAACTGGG GAGATGTCTGGGAGGGCTGGCAGTGAGGGCCAAAAGATCCAGGTACGCTT CCTTGGAAAAACGTTTGTGTGTGCACGTGCTGTGTGGGAGGGGGAGGANN CTTCCCTACATGCTTGGGGCACACATAAATAATACACTGACCCTTAAGTG TTCCCTGGGGGCCTTTAACCCTTACCCCTTGGGTTTCACCCTTTTTACAT AATGAATTCATCAAATGTCGCTGTAGTGCTTTCTAAAAAAACACCTCACC TCTTATTCACCCTTACATGCTTCATCCCCCTCTGTCATTCATCGTATTTT CGCGGTCGTACTTATAATACGCACCGGCCATACAATACCCTCTCCCTCTT CCCCTCCTTTTTTCTCTATCCTATATTTTTCCATTAN	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXATGAACATCTATTCGTACTTGAATTCCTAG CCAGAGCAATTAGACAACAAAAGGAAGTCAAAGAGATACAAATTTGAAAG GAAGAAGTCAAAATATCACTATTTGCAGATGATATGATAGTATACTTAAG TGACCCAAAAAACCCCAACAGAGAACTCCTACAGCTGATAAACAACTTCA TCAAAGTGGCTGGATATAAAATTAACTCAAACAAATCAGTAGCCTTCCTC TACTCAAAGGATAAATTTGCTGAGAAAGAAATTATGGAAACAACGCCCTT CACAATGGTCACAAATAATATAAAATATCTTGGTGTGACTCTAAGCAAGC AAGTGAAAGATCTGTATAACAAGAACTTCAAGTCTCTGAAGAANAAAATT GAAGAAGATCTCCGAAGATGAAAAGATCTCTCATGCTCATGGATTGGGAG GGATAATATAGGAAAAATGGCCATCCTGCTGAAAGAACCTACAGATTCAT TGCGATCCCTCCCAAAATCCCACTAATTTTTCTCTTAAAATTGGAAAAAA AAATTCTCGTCCCCTTGGGAATACCACAACCCCCCGAGAGGCGAACCTTT CCTCCTTTAATAAAAAATTCTCCTGTGGAATACCCACTCTTTGTTCTTTT CTGTTTTTCTAGAGCACCTGAGTCTATCTGTTTGTTTCTGTTTACCGCCC GCCCCTCGTATCTTTTTCTTCCTCCCTCGTCTATCTTCTTTTCTTC
quality values	Open. Hide. 6 6 6 9 15 41 41 37 37 32 27 12 19 9 9 9 14 23 34 34 41 29 29 29 19 18 9 9 9 12 9 11 11 11 12 12 20 18 7 7 7 7 17 21 39 25 28 28 28 31 25 30 21 21 9 9 9 9 9 12 18 17 26 17 13 13 13 18 24 34 39 57 50 50 53 53 53 53 53 53 53 47 47 47 47 47 47 68 68 68 68 68 68 68 68 68 68 54 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 59 59 59 59 59 57 68 68 68 68 57 57 57 57 59 59 57 57 59 59 59 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 52 52 50 50 43 43 35 32 28 27 32 44 50 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 57 57 59 59 59 59 59 68 68 59 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 57 57 57 54 54 54 57 57 48 48 48 46 46 43 43 48 48 48 59 59 59 59 59 48 47 48 48 48 48 57 57 57 59 57 57 53 53 37 37 32 32 25 34 34 43 39 26 30 25 31 28 39 59 47 47 48 44 43 50 46 46 41 37 37 32 30 25 32 33 37 29 34 23 23 18 25 23 37 37 37 32 37 37 40 40 41 41 41 39 32 29 29 32 37 41 39 29 37 30 25 26 32 24 28 18 18 14 26 26 37 37 36 30 30 37 33 26 19 13 13 16 16 19 25 9 9 9 9 9 9 11 11 9 3 0 0 3 12 9 9 10 10 10 12 8 8 8 8 10 10 10 10 11 11 11 11 10 8 8 8 8 8 8 10 10 8 10 8 8 8 6 8 8 8 6 6 8 8 11 16 10 10 10 10 10 9 10 10 9 13 8 8 8 10 14 11 10 10 10 11 10 10 14 13 13 8 9 8 8 8 10 10 10 10 10 10 9 11 11 11 11 10 9 9 9 9 9 10 21 28 9 9 9 9 10 10 11 17 17 12 12 11 9 9 10 9 9 10 8 10 8 8 8 8 8 8 8 8 10 8 8 6 6 6 8 8 8 6 8 8 8 8 8 10 10 12 10 9 9 8 6 8 6 6 8 8 10 10 8 8 8 6 10 6 6 6 7 8 8 10 10 8 8 8 8 10 8 8 10 10 8 10 10 8 9 9 14 11 10 11 8 8 7 7 10 8 10 10 6 6 6 6 8 11 11 14 13 13 11 11 11 12 11 11 10 10 8 8 10 8 8 7 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 12 8 6 6 8 8 7 7 8 11 9 9 10 9 9 8 8 8 13 18 20 22 21 13 9 9 9 9 9 8 8 12 12 10 8 8 8 8 10 10 11 10 11 11 8 10 10 3 0	Open. Hide. 6 6 6 8 7 7 9 6 8 9 21 20 37 36 39 44 44 39 39 39 39 39 39 19 19 18 9 9 6 6 6 7 8 8 9 11 19 21 30 43 43 48 47 47 47 47 37 41 39 50 42 37 25 18 11 10 10 10 10 10 14 23 37 30 28 28 30 31 33 33 36 36 36 53 53 53 53 53 53 57 57 57 57 57 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 51 53 68 68 68 48 57 48 41 41 41 44 47 47 47 47 57 59 68 68 68 57 57 57 57 57 57 59 59 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 68 68 57 57 57 57 57 57 54 59 57 68 68 68 68 68 57 57 57 57 59 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 44 59 43 35 35 40 44 47 59 59 68 59 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 48 50 50 50 39 37 37 29 21 15 11 11 11 12 11 11 12 27 23 43 43 59 50 50 50 53 47 50 53 53 59 59 59 59 57 57 57 57 57 57 59 59 59 59 57 57 54 54 54 48 48 48 57 47 59 36 43 43 39 39 44 59 59 59 59 59 59 53 50 50 50 42 41 47 41 43 39 32 32 43 36 36 36 41 41 50 48 43 43 37 37 43 43 43 48 39 39 35 35 35 39 43 57 43 43 28 28 21 26 14 28 26 43 36 36 36 33 37 37 41 40 39 34 34 25 22 25 30 30 25 32 30 37 28 22 17 20 17 3 0 3 27 21 30 26 24 30 22 30 27 29 21 19 10 13 8 8 8 8 11 13 11 13 9 10 12 13 24 31 20 23 19 22 19 14 15 15 12 12 11 9 9 9 9 10 15 25 19 22 14 13 9 8 8 8 8 11 8 10 10 11 10 12 13 13 8 8 8 8 9 9 11 10 12 12 11 11 9 9 9 8 8 10 8 10 10 21 15 12 10 10 11 10 11 10 10 10 10 9 9 10 12 10 10 11 11 11 9 9 9 12 12 18 15 8 8 8 8 8 12 15 17 17 12 10 8 8 8 8 9 9 10 10 10 12 15 10 10 9 9 15 11 11 16 17 13 9 6 6 6 6 12 15 20 20 20 18 22 16 10 12 11 10 12 10 10 10 10 8 8 8 12 10 8 8 8 8 8 8 10 6 6 6 6 6 9 14 16 15 9 9 8 8 8 8 10 11 10 10 10 10 10 8 8 8 8 9 8 8 8 8 8 10 10 14 14 14 14 20 18 10 8 8 8 8 8 8 9 8 8 8 8 8 9 10 9 8 8 8 10 8 9 11 12 12 15 15 11 11 8 11 11 8 8 8 9 8 8 8 10 10 10 17 11 12 9 9 9 9 11 10 9 10 8 8 8 8 8 8 8 8 6 10 7 6 6 6 8 8 8 8 10 12 19 12 12 10 10 8 6 6 6 6 8 12 6 6 8 11 16 9 9 10 12 11 11 11 16 12 11 12 10 6 6 6 11 8 8 8 8 10 10 9 9 9 12 20 9 8 6 6 6 8 8 14 14 12 24 15 15 14 14

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no459_e16.b1 MSMg01no459_e16.b1 CHROMAT_FILE:
MSMg01no459_e16.b1 PHD_FILE: MSMg01no459_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:10 2005
         (418 letters)



>mm_chr18_76933621_76934438
          Length = 818

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 2/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgttccccagtcacctgatttcctatccccaggtccgatttcttaaaagttctctcagc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 gtgttccccagtcacctgatttcctaaccccaggtccgatttcttaaaagttctctcagc 260

                                                                       
Query: 61  actcaaaagcaatgcaggctggggcaaagcccttaatacacaggcctctggggaatactt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaaaagcaatgcaggctgggtcaaagcccttaatacacaggcctctggggaatactt 320

                                                                       
Query: 121 aagatttccattgcctcacacacaactaaaacagatatgtactctaatctcccgacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatttccattgcctcacacacaactaaaacagatatgtactctaatctcccgacacag 380

                                                                       
Query: 181 ttcctcacaggaaactcagtcaagtaagtt-cgcaagctgctaaataaggagttaaatcc 239
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 381 ttcctcacaggaaactcagtcaagtaagttac-caagctgctaaataaggagttaaatcc 439

                                                                       
Query: 240 tgagtccagatcggtgaacggggtgttctcggggccccacacacttcagtaaagttagag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgagtccagatcggtgaacggggtgttctcggggccccacacacttcagtaaagttagag 499

                                                                       
Query: 300 ttaatggctcataggtacttctgtggttaactggggagatgtctgggagggctggcagtg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaatggctcataggtacttctgtggttaactggggagatgtctgggagggctggcagtg 559

                                                                      
Query: 360 agggccaaaagatccaggtacgcttccttggaaaaacgtttgtgtgtgcacgtgctgtg 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agggccaaaagatccaggtacgcttccttggaaaaacgtttgtgtgtgcacgtgctgtg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information