BAC Information

Click to search

BAC

Clone NameMSMg01-459G21
Chromosome18 (Build37)
Map Location 58,293,621 - 58,293,986
singlet/doubletsinglet
Overlap geneFbn2
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459G21.T7 (MSMg01no459_g21.b1)MSMg01-459G21.TJ (MSMg01no459_g21.g1)
ACCAG545026AG545027
length798645
length of high quality
(start - end)
379 (65 - 443)---
definitionCHROMAT_FILE: MSMg01no459_g21.b1 PHD_FILE: MSMg01no459_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:21 2005CHROMAT_FILE: MSMg01no459_g21.g1 PHD_FILE: MSMg01no459_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCCTCATGTCACTATACGACTCACTATTTCGAGAGGATCCGCGGAATT
CAATTGGTTTCAACATTGATTTGGGGGAAATTTCATTTGTTTAAAATCTG
GACATAAGAAAATGAGGTCCTATGTAAAAATGAGTATGGTTCATTGTCAG
TAGCAGATCTTCGTCCACAGATGAGCGGCTATTTATCACTATCAGTTAAA
ATCTGTCTTAATAATTGGCTCAGCATCTTTAAATGAATCCACGTAGAATG
TCAGAGTAGATTAAAGATTACTATCTCCACAAAAGATGCAGGAAAAACAT
GAAAAACAAAGGAAGCTGAACTTTCTAGTGTCACTTCCTGGTGTGACTTC
CTAGTGTCACTTCATAGTGCCACTTCCTGATCAGAAAATCTACACATTAG
CAATTTCTTGAAACGGCTTTCGCCACCCTGATCACGTGCCTCTGTGTAAA
ACTACAGCTGATATCTTCCTTAAAAATAAAAGAATGGTTCTCCCACATCA
GGAAAACACACGAGACTGGTGCCACCCTGTTTGGTCATTTGCCTCGGAGA
CCGTATCCAGGTCCATTACGGTATAAAAGGGGTAATACAAGGGCCTTATA
ATACTTATACAAAATTCCTTCCTTTCCCCCCTTGCCTTTTGGGGGTGAAT
TCCTTTTTCTTCCCCGGATTTCTCCGAACTTTTTATANTCATTTTCCTTT
CTTCCCGCCCTTCCGCCTGCCCACGTATATACTTCTTCTCTCAAATATGT
GGCCGCCCCTCTTTTCCTCCCCCTCCCTTCTCTTATTTTCTGTTTTTG
GTCCGATATNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTGTTCAG
GGGGGATTTCACTTTACATGCGTTCTGAAGAGTGTTAGTGCACAGAAGCT
CCAGATAGGTTTAAACTTTCGGAAATTTCCTGGCCCCCCGGTCAAGGGAA
AGCATTTTTTTTTTAAGGTTCGCAGAGGTTTTTCCCTAAAAAAAACCCCG
CCCTTGGGTTATTTTTTGGGGAAATTGGGATTTTCCCTAAACGGGGGGGG
GGAAAAAAAATTTTTTTTTTTTTTTCCAAGGTTTCCCCCCCCCCGGGGGG
GGGTTCCCCCCCCTCTTTTTTTTTTGCCAAGACAAAAAGGGCCCCTTGGG
GGGGGGNTTTTTTTTTTAAANNNNNNNNNNNNTTTNNNNNNTTTTTTAGG
GGGNCNNNNNNNNCTTTNNNATAGTGTTTGTTTGTAGGCGGCGNCCCGNN
NNNNNNNNNNNTGATNNNCTNTNNNNNTTTTTTTTTTNNNNNNNNNNNNN
NATTCTGTCCTCCTATAGGTGACNNATTATAATGGTGTATTTGTGGGAGT
TTGTATTACTTTATTGANAGAGTTGGATTGGATGNTGTTNTGGNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_g21.b1 MSMg01no459_g21.b1 CHROMAT_FILE:
MSMg01no459_g21.b1 PHD_FILE: MSMg01no459_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:21 2005
         (379 letters)



>mm_chr18_58293488_58294266
          Length = 779

 Score =  617 bits (319), Expect = 0.0
 Identities = 358/379 (94%), Gaps = 13/379 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatttgggggaaatttcatttgtttaaaatctggacataagaaaatgaggtcctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 499 attgatttgggggaaatttcatttgtttaaaatctggacataagaaaacaaggtcctatg 440

                                                                       
Query: 61  taaaaatgagtatggttcattgtcagtagcagatcttcgtccacagatgagcggctattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 439 taaaaatgagtatggttcattgtcagtagcagatcttcgtccacagatgagcagctattt 380

                                                                       
Query: 121 atcactatcagttaaaatctgtcttaataattggctcagcatctttaaatgaatccacgt 180
           |||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 379 atcactatcttttaaaatctgtcctaataattggctcagcatctttaaatgaatccacgg 320

                                                                       
Query: 181 agaatgtcagagtagattaaagattactatctccacaaaagatgcaggaaaaacatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agaatgtcagagtagattaaagattactatctccacaaaagatgcaggaaaaacatgaaa 260

                                                                       
Query: 241 aacaaaggaagctgaactttctagtgtcacttcctggtgtgacttcctagtgtcacttca 300
           |||||||||||||||||||||||||||||||||||             ||||||||||| 
Sbjct: 259 aacaaaggaagctgaactttctagtgtcacttcct-------------agtgtcacttcc 213

                                                                       
Query: 301 tagtgccacttcctgatcagaaaatctacacattagcaatttcttgaaacggctttcgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tagtgccacttcctgatcagaaaatctacacattagcaatttcttgaaacggctttcgcc 153

                              
Query: 361 accctgatcacgtgcctct 379
           |||||||||||||||||||
Sbjct: 152 accctgatcacgtgcctct 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)