Query= MSMg01no459_i04.b1 MSMg01no459_i04.b1 CHROMAT_FILE:
MSMg01no459_i04.b1 PHD_FILE: MSMg01no459_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:27 2005
(526 letters)
>mm_chr18_20270502_20271426
Length = 925
Score = 913 bits (472), Expect = 0.0
Identities = 510/524 (97%), Gaps = 5/524 (0%)
Strand = Plus / Minus
Query: 5 gaattctctga--tttcaaaacttacttaaggaaaaaaatatagtttatctgctttggag 62
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 725 gaattctctgagctt--aaaacttacttaagg-aaaaaatatagtttatctgctttggag 669
Query: 63 ttcttagataagttttaaaccaatagctgtgtcttaaatataataaaagttcagagagtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttcttagataagttttaaaccaatagctgtgtcttaaatataataaaagttcagagagtt 609
Query: 123 ctgtaagtttgtgtcacttagcacggtggtttgaaaatacttagattttgaaggtttttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctgtaagtttgtgtcacttagcacggtggtttgaaaatacttagattttgaaggtttttt 549
Query: 183 ccttttctaagacagtctgagaagtaatttactgacagtggagtggttctaagtgtcatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccttttctaagacagtctgagaagtaatttactgacagtggagtggttctaagtgtcatt 489
Query: 243 tatatgagcttcaaaaatgcttctaatatttctcacttcttcaatagtaaactaaaatag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 488 tatatgagcttcaaaaatgcttctaatatttctcacttcttcaatagtaaactcaaatag 429
Query: 303 cagtaataaaaagccttgagagctgctgtatccgtgcttatagaattccagaatccagta 362
||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 cagtaataaaaagactcgagagctgctgtatcattgcttatagaattccagaatccagta 369
Query: 363 cttttccaggctaaagatctgcgaggttttggagtattagaggcaatactctacaaattc 422
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 368 cttttccaggctaaagatctgtgaggttttagagtattagaggcaatactctacaaattc 309
Query: 423 aatggatcacactacattctattgcaattatgtaataatgatgtagtcctaagaactgtt 482
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatggatcatactacattctattgcaattatgtaataatgatgtagtcctaagaactgtt 249
Query: 483 cacttacttatttcactgatactaaatgacttcccaaagccagt 526
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 248 cacttacttatttcattgatactaaatgacttcccaaagccagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_i04.g1 MSMg01no459_i04.g1 CHROMAT_FILE:
MSMg01no459_i04.g1 PHD_FILE: MSMg01no459_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:27 2005
(470 letters)
>mm_chr18_20094802_20095671
Length = 870
Score = 857 bits (443), Expect = 0.0
Identities = 464/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 1 atgctgctttgcaaagacaaggaactggcttagttgcagtactctttctcactagaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgctttgcaaagacaaggaactggcttagttgcagtactctttctcactagaactt 260
Query: 61 tgaaagagtgctatctgggaaataattcctcaaataggaagtaagaagacgacacaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgaaagagtgctatctgggaaataattcctcaaataggaagtaagaagatgacacaggag 320
Query: 121 ctctcctaaattagcactacagtgtttcttttgattagataaacccacagtttcaacgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctctcctaaattagcactacagtgtttcttttgattagataaacccacagttttaacgtt 380
Query: 181 aaagtggcacaataaatatttaataagaaaagaacaatattttctgaaatgcaatatcaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtggcacaataaatgtttactaagaaaagaacaatattttctgaaatgcaatatcaa 440
Query: 241 aggctgtaagggatgagtaactaaacctaatagtgctggatcatagccaaatgtggtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggctgtaagggatgagtaactaaacctaatagtgctggatcatagccaaatgtggtagc 500
Query: 301 acacacctttaatcccagcatttgggaggcagaggcattagtatctccatgagctcaaga 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcacctttaatcccagcatttgggaggcagaggcattagtatctccatgagctcaaga 560
Query: 361 tcagcctgacttacatagttagttctaggacagggaaagccagccagtgctaaatagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagcctgacttacatagttagttctaggacagggaaagccagccagtgctaaatagtga 620
Query: 421 aagcctttctttaaaaaaaaaata-gaaagaaagaaaagaaaaaagaaagg 470
|||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 621 aagcctttctttaaaaaaaaaaaaagaaagaaagaaaagaaaaaagaaagg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
