Query= MSMg01no460_f17.b1 MSMg01no460_f17.b1 CHROMAT_FILE:
MSMg01no460_f17.b1 PHD_FILE: MSMg01no460_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:34 2005
(556 letters)
>mm_chr18_51571518_51572473
Length = 956
Score = 1023 bits (529), Expect = 0.0
Identities = 547/553 (98%), Gaps = 3/553 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgataacttcttgtctcagttactttaaaagtttcaggatgtagaagacatt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgacaacttcttgtctcagttactttaaaagtttcaggatgtagaagacatt 264
Query: 65 ttctctaagagaagagacattggtgtttttaatctttctgtcttttattacattagataa 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctctaagagaaaagacattggtgtttttaatctttctgtcttttattacattagataa 324
Query: 125 ataacatgttgacacacatttaaatatattttatattgtgcatacatatattagcgttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataacatgttgacacacatttaaatatattttatattgtgcatacatatattagcgttta 384
Query: 185 ttagaatgttaatcaacttcaagatctgtttcacaaaaaaatagataaaattttaaataa 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ttagaatgttaatcaacttcaagatctgtttcacaaaaaa-tagataaaattttaaataa 443
Query: 245 tttggaaatgtgtacagaatgtgaagaaaa-agataagaacatggtaagctccaggaaaa 303
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 444 tttggaaatgtgtacagaatgtgaagaaaata-ataagaacatggtaagctccaggaaaa 502
Query: 304 tatgaaaatgtgaggcatttctgtttagacaacctctatgtatattttatattcttgctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatgaaaatgtgaggcatttctgtttagacaacctctatgtatattttatattcttgctt 562
Query: 364 catattcttgttgtcttggaccttattaaaactatgctacacttactgcatagaagtact 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 catattcttgttgtcttgaaccttattaaaactatgctacacttactgcatagaagtact 622
Query: 424 cttagcccacttaaaatatttacttacattaattaatttggcatctaatgtcccaaagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttagcccacttaaaatatttacttacattaattaatttggcatctaatgtcccaaagct 682
Query: 484 ttaatgatctagcacagtccatactttgcatcttctgtttggatctggggaaaaaaaaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttaatgatctagcacagtccatactttgcatcttctgtttggatctggggaaaaaaaaac 742
Query: 544 tgcaagcatgaga 556
|||||||||||||
Sbjct: 743 tgcaagcatgaga 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_f17.g1 MSMg01no460_f17.g1 CHROMAT_FILE:
MSMg01no460_f17.g1 PHD_FILE: MSMg01no460_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:34 2005
(558 letters)
>mm_chr18_51704617_51705573
Length = 957
Score = 1048 bits (542), Expect = 0.0
Identities = 554/558 (99%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 1 aatgacagaaaattaaagacgtcaagttcattacttcttttttcttttctgttttttttt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 757 aatgacagaaaattaaaaacgtcaagttcattacttcttttttcttttctg-tttttttt 699
Query: 61 ttaaatacagaaaacacaatttctatggtagtcatactgttagaatagagacagaaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttaaatacagaaaacacaatttctatggtagtcatactgttagaatagagacagaaatta 639
Query: 121 acctgaattgcttaaagagtaagtcacctagaagcaagcatgtaacaatagtagaatagt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 638 acctgaattgcttaaagagtaagtcaactagaagcaagcatgtaacaatagtagaatagt 579
Query: 181 ttgaagatgtgaaaactgaggactgctcaataaatggtgctaataatttctgataacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttgaagatgtgaaaactgaggactgctcaataaatggtgctaataatttctgataacaga 519
Query: 241 agagttttctgaaaccttgcatagggagtaatagcacaagatactaccctaatattattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agagttttctgaaaccttgcatagggagtaatagcacaagatactaccctaatattattt 459
Query: 301 agcctaacacccttaaaacattggtacagaactgtgtagatacaggaataataaatatag 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 458 agcctaacacccttaaaacattggtacagaattgtgtagatacaggaataataaatatag 399
Query: 361 atgagtacatgtttgctacatagaaaatatggtgattgaatattgttctagattgtgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgagtacatgtttgctacatagaaaatatggtgattgaatattgttctagattgtgagc 339
Query: 421 aattaatttccttgggtagaaaatgaagaatatatttatattttgtctaaaacgagaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aattaatttccttgggtagaaaatgaagaatatatttatattttgtctaaaacgagaaaa 279
Query: 481 aaaattagctagtgtgatagtcatcaggaagtgttgattactggtttctaagtttgtaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaaattagctagtgtgatagtcatcaggaagtgttgattactggtttctaagtttgtaat 219
Query: 541 catatattatgatacacg 558
||||||||||||||||||
Sbjct: 218 catatattatgatacacg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
