BAC Information

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BAC

Clone NameMSMg01-460N21
Chromosome18 (Build37)
Map Location 11,466,057 - 11,672,254
singlet/doubletdoublet
Overlap genenone
Upstream geneAK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460N21.T7 (MSMg01no460_n21.b1)MSMg01-460N21.TJ (MSMg01no460_n21.g1)
ACCAG546123AG546124
length729713
length of high quality
(start - end)		452 (44 - 495)491 (72 - 562)
definitionCHROMAT_FILE: MSMg01no460_n21.b1 PHD_FILE: MSMg01no460_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:15 2005CHROMAT_FILE: MSMg01no460_n21.g1 PHD_FILE: MSMg01no460_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,466,057 - 11,466,504)(11,671,838 - 11,672,254)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCTTGTTTGTGTTCATTGTGAAATTTTCCTTTCTCCTTCACTTATG
TTAGATAAAGTAACCTGGGATTTTAGTTACTACTTTCAGAGGTTAAAAAG
GCCATTCCATGGGTAAGGCCCCCTTATATAGTGTCATGTGTCCAGTATTT
CTCGAAAGAAATAATCTTCGAATTTTGTACTGCCTTTGTGTTTCCTTGAA
ACAGCCATGTGTCTCCTCCATTCCAGTTCTGTAGTTGGCTTTTAAGACTA
GAGAATAGAGAGCTGACTAAGATGTGACTCGGATGTGTTCTGGAGTTTAT
GTGTCCTTTGCCCATAAGGATAATCTCTCACCGTTATACAAATCTGTCAA
CAAAGAGTTCCCCAATCATGTGTCTAACATTCTTCCTTCTCCCTCAGAAG
AGGCCAGGCATATCAGGCATAAGTGGAACTGCATCTATAGTCCTGTGGTC
TGGCTACATAAACAGACCTATGATGCANGCATGTAAAGGCCTCTACAGAA
CCCAGGCAGTTACATTTGAACACACTATTGGAAATGCTCTTGATAAGATA
AAATCCTTGGTCAGAATTTAAATGGAAAAACCTGAACTCCCCAAGTTTGA
ACCCAAAAAGGAATCCTTTGCTTGGCTTTAAGACCCCGTTGATTTTATAA
GTCCACCCACTGTCCCACCCCCGGATGGT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGGTATATAAGTCAGGCTTAAATCCAA
CTACTGTTTATCTTTATGCTATTTCTGAACACATTCATTACAACAACCAG
CTCAATCCTTCAGAAAGTTACAATAGTGTGAGCATTAATGCATTCACAAT
GCCTTTACCTAAAGATGGATCCAACAATAATATTTTGACTATTGGCACAA
AATGTTTTTTTAAATTCATGTTAATTCTCATACTTCAAATTTTGTGTGTA
TGGATGTTTTTGTCTGCAGATACGTCTGTGTACCATGTGCATGCTTGGTG
CTTATGGAGATGAGAAGAGGACATCAGATTCCTTGGAATGTTAGTTACAG
TTGGTTGTGAGCCACTCCATGGCTGCTACAACCAGAACCCAGGAACTCTG
GAAGAACAGCCATCTCTCCAGCCTCAGACCTCATACCTTAAAACAGAACA
CTTGACTTATTTCACATGTATATACTTGTGTATTCTTTACATACATACTT
ATATATGACATGTGGTAATGTGATATATTTAATTACTGACATTATATTAT
ATAATTCTAATGCCATCCCATTTAACATCTAATTGCCAAAATGTTTCATG
ATTTCCCTATGATGGTTAATCTTTCCAGGGAAAACCCTTATATTTCTCGG
ACTAATTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_n21.b1 MSMg01no460_n21.b1 CHROMAT_FILE:
MSMg01no460_n21.b1 PHD_FILE: MSMg01no460_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:15 2005
         (452 letters)



>mm_chr18_11465853_11466704
          Length = 852

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcttgtttgtgttcattgtgaaattttcctttctccttcacttatgttagata 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctagtttgtgttcattgtgaaattttcctttctccttcacttatgttagata 264

                                                                       
Query: 65  aagtaacctgggattttagttactactttcagaggttaaaaaggccattccatgggtaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtaacctgggattttagttactactttcagaggttaaaaaggccattccatgggtaag 324

                                                                       
Query: 125 gcccccttatatagtgtcatgtgtccagtatttctcgaaagaaataatcttcgaattttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccccttatatagtgtcatgtgtccagtatttctcgaaagaaataatcttcgaattttg 384

                                                                       
Query: 185 tactgcctttgtgtttccttgaaacagccatgtgtctcctccattccagttctgtagttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactgcctttgtgtttccttgaaacagccatgtgtctcctccattccagttctgtagttg 444

                                                                       
Query: 245 gcttttaagactagagaatagagagctgactaagatgtgactcggatgtgttctggagtt 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gcttttaagactagagaatagagagctgactaagatgtgactcagatgtgttctggagtt 504

                                                                       
Query: 305 tatgtgtcctttgcccataaggataatctctcaccgttatacaaatctgtcaacaaagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgtgtcctttgcccataaggataatctctcaccgttatacaaatctgtcaacaaagag 564

                                                                       
Query: 365 ttccccaatcatgtgtctaacattcttccttctccctcagaagaggccaggcatatcagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttccccaatcatgtgtctaacattcttccttctccctcagaagaggccaggcatatcagg 624

                                       
Query: 425 cataagtggaactgcatctatagtcctg 452
           ||||||||||||||||||||||||||||
Sbjct: 625 cataagtggaactgcatctatagtcctg 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_n21.g1 MSMg01no460_n21.g1 CHROMAT_FILE:
MSMg01no460_n21.g1 PHD_FILE: MSMg01no460_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:15 2005
         (491 letters)



>mm_chr18_11671838_11672728
          Length = 891

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggtatataagtcaggcttaaatccaactactgtttatctttatgctatttctgaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaggtatataagtcaggcttaaatccaactactgtttatctttatgctatttctgaaca 358

                                                                       
Query: 61  cattcattacaacaaccagctcaatccttcagaaagttacaatagtgtgagcattaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cattcattacaacaaccagctcaatccttcagaaagttacaatagtgtgagcattaatgc 298

                                                                       
Query: 121 attcacaatgcctttacctaaagatggatccaacaataatattttgactattggcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 attcacaatgcctttacctaaagatggatccaacaataatattttgactattggcacaaa 238

                                                                       
Query: 181 atgtttttttaaattcatgttaattctcatacttcaaattttgtgtgtatggatgttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atgtttttttaaattcatgttaattctcatacttcaaattttgtgtgtatggatgttttt 178

                                                                       
Query: 241 gtctgcagatacgtctgtgtaccatgtgcatgcttggtgcttatggagatgagaagagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gtctgcagatacgtctgtgtaccatgtgcatgcttggtgcttatggagatgagaagagga 118

                                                                       
Query: 301 catcagattccttggaatgttagttacagttggttgtgagccactccatggctgctacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 catcagattccttggaatgttagttacagttggttgtgagccactccatggctgctacaa 58

                                                                    
Query: 361 ccagaacccaggaactctggaagaacagccatctctccagcctcagacctcatacct 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ccagaacccaggaactctggaagaacagccatctctccagcctcagacctcatacct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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