BAC Information

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BAC

Clone NameMSMg01-461C06
Chromosome18 (Build37)
Map Location 59,401,547 - 59,401,922
singlet/doubletsinglet
Overlap gene4833446K15Rik
Upstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
Downstream geneLOC667549, EG240327, LOC546714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461C06.T7 (MSMg01no461_c06.b1)MSMg01-461C06.TJ (MSMg01no461_c06.g1)
ACCAG546333AG546334
length738855
length of high quality
(start - end)
422 (49 - 470)49 (78 - 126)
definitionCHROMAT_FILE: MSMg01no461_c06.b1 PHD_FILE: MSMg01no461_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:37 2005CHROMAT_FILE: MSMg01no461_c06.g1 PHD_FILE: MSMg01no461_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCC
GCGGAATTCTACATCTTATTCTGCAGGCAGCCGAAGAGGGCAGTCTTCTA
AAGGCAGCCATGAGGAGACTCTGATTCCACAGTGGGTAGAGCTGGAGCAT
AGGAGATGTCAAAGCCAACCCACTAAGTAACAAGGCCACACCTATTCCAA
TGAGGCCACACCTCCTAGTGGTGCCACTCCCTGTTAGCCAAGCATTCAAA
CACATAAGGCTATGGGGGGGGGAGGACCTATTCAAACCACCACAGAACTG
TATTAAATAGAGTACTTGCTCATACCATTTGAATTTAAATATAGCTCAAC
ACTGTCCAACAGAAAAAAAAAGCCCTATTTGAAATTTTTGATCAAATTAT
ATATAAATGTTTATAAGACATTATTCCATGTTCACCAAAAGAATAAAATT
ATTTCAGGAATTTGTTCAAAAGTACAGTGAACATCATAGAAGACAAAGAC
AATTTCCTTATGTTTCCTATACTTGTAAGGGCCAGAATTCCAGGAAATCT
CCTGTGAACCAGTCTTTTCTAGACATGCTCCCAGGTAAAAGACATCTTTT
TACCGGGCCTCCTTCCTAGCTTTAGAACTACTACCTCCTGAGGACCGCTA
AAATATGGACCACTATTCTCCACCCTAGACGAATCCCTTCTTGTTTTGGT
CCCATGTATAAAAATTGTCACCGACCTTGTTTTACCCC
TCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCGAAAAATTCATAGTGAAAATGCAGTGTTTATG
TGTGTGTGTGTGTGTGTGTGTGTGTCCCTGTAAAACCCCCCTTTCTTTTT
TTCCCCCCACTTCTTTCCCCTCTCCCTCCTTCTCCCTTTTCATACCCCAT
TCCCTTATTTCCTCTTTCCTCTCTTATACCTTTCTCTTCCTCCCCCACAC
TTCATTCCTTTTTTTTCACATACCTTCACCTTATCCTCCCTCCCTCCCTC
TTCTTTCATTCCCCACCTCTCCCCCCCCTTTTCATCCCTTCACCCTCCCC
CCCCTCTTTCCCTCTCCATTCTCTTTTTTTTTCCCTCCCCCTTTTCTTTC
TCTTCTTCCTCTCCCTCTCTCTTCCCTTCCCCCTCTCTTTCTTTTCCTCC
CCCCCCCCCTTACTCCCCCCTACTTCTCAAATCTTCTCTCTATACACTCC
ACCCCCCTCTAACCCAACTCCTTCTACTCTCACATATTTATCTACTAAAT
CCACACATACTTCCCCCTCTATTCTTTCTCCCCCCATTCCCTCCATCTCT
TTCTCTACCCCTCTTTTCCTCTTTTTACCCTATATTCCCCCTATACCTTC
ATCTCCTCCTCTTTCACCACCCCCTNTTCTTCCCATTTTATTTCCCCTCT
TCTCCTCTCTTTTCTCCTCCCTCCTCCTCCCCTTAAACACCAACCCACTC
TTATTCACCACTCTTCCCCCCTCACCAATCTCTACTCTCCCTCCCCTCTT
TCCTCCCTCTCCCCTTTTTCTTCTCTTTCCTCTTCTATATATTCCTCTCT
CCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_c06.b1 MSMg01no461_c06.b1 CHROMAT_FILE:
MSMg01no461_c06.b1 PHD_FILE: MSMg01no461_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:37 2005
         (422 letters)



>mm_chr18_59401101_59401922
          Length = 822

 Score =  681 bits (352), Expect = 0.0
 Identities = 367/376 (97%), Gaps = 7/376 (1%)
 Strand = Plus / Minus

                                                                       
Query: 54  aggcagccatgaggagactctgattccacagtgggtagagctggagcataggagatgtca 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 822 aggcagccatgaggagactctgattccacagtgggtagagctggagcataggagacgtct 763

                                                                       
Query: 114 aagccaacccactaagtaacaaggccacacctattccaatgaggccacacctcctagtgg 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aagccaacccactaagtaacaaggccacacctattccaatgaggccacacctcctagtgg 703

                                                                       
Query: 174 tgccactccctgttagccaagcattcaaacacataaggctat-------gggggggggag 226
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 702 tgccactccctgttagccaagcattcaaacacataaggctatggagggggggggggggag 643

                                                                       
Query: 227 gacctattcaaaccaccacagaactgtattaaatagagtacttgctcataccatttgaat 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gacctattcaaaccaccacagaactgtattaaatagagtacttgctcataccatttgaat 583

                                                                       
Query: 287 ttaaatatagctcaacactgtccaacagaaaaaaaaagccctatttgaaatttttgatca 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttaaatatagctcaacactgtccaacagaaaaaaaaagccctatttgaaatttttgatca 523

                                                                       
Query: 347 aattatatataaatgtttataagacattattccatgttcaccaaaagaataaaattattt 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aattatatataaatgtttataagacattattccatgttcaccaaaagaataaaattattt 463

                           
Query: 407 caggaatttgttcaaa 422
           ||||||||||||||||
Sbjct: 462 caggaatttgttcaaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)