BAC Information

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BAC

Clone NameMSMg01-461G04
Chromosome18 (Build37)
Map Location 76,121,180 - 76,296,063
singlet/doubletdoublet
Overlap geneZbtb7c, 4833419G08Rik
Upstream geneRpl17, BC031181, Dym, LOC628356, EG667777, Smad7, Gm672
Downstream geneLOC668184, Smad2, LOC668188, EG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461G04.T7 (MSMg01no461_g04.b1)MSMg01-461G04.TJ (MSMg01no461_g04.g1)
ACCAG546521AG546522
length755752
length of high quality
(start - end)		271 (49 - 319)396 (82 - 477)
definitionCHROMAT_FILE: MSMg01no461_g04.b1 PHD_FILE: MSMg01no461_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:58 2005CHROMAT_FILE: MSMg01no461_g04.g1 PHD_FILE: MSMg01no461_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,121,180 - 76,121,444)(76,295,671 - 76,296,063)
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCG
CGGAATTCTTAATTTATCTGGCTTTTAATTCAGTGTTTTACTCGCTGTCC
TTCACATTGCCCTTGCTCATACAAATGTGCCCATTATAGCCTGGTGTGGG
GCCACGATCCTGCCTTCTAGCCTGAGTGTGTCTTCCTGGGGAACAGGTTT
CCTTTGGGAGAAGGAGTCTCAGTGTGGGCTGAAACCAGCCCACCAGGGTA
GATCAGACCTGGCAGCTCCCTTCTGTTAGGAAGTGGTGAGCTACAACAGC
TTTCCAGACTAGGTGTCTTTTTTTATGTAACATTCTTGAGTAGCTTACAC
TGTATTGGGATAACTTGCATATTTCACTACCGTTGTCCCACTTAGATATG
AGGCTCTGATACTCAAGCGTTACACAGAATATCTATCTAATCCATAGGAT
GCCCAGTCTGTGCCCTAGGACAATTGACCGCTATTTTGATCTTTCATTTG
CACGATATGACCCGGTACTAAGTCACAGTTAGTTATTTGTTCCCTGATGT
CTACTCCTCGCTTTATATTTTCCTATTTTCGATGCGTCAGTATATTCTCC
ATATTTGTCCACTGTCTGCAACTTTCCTCCCTGTTGCTCCCTCACTTACT
CTTCATCTTTTTGTTACCCCCTTCTCTTTTTTACCTCTGTATCCTACCCT
TTATTTCTTTCTCTTTTATTTCCATCTCCCTCTATGATCCATTTTTTTTT
TCCCN

TTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTGTTAATATGGACT
CTCAGGAGGGGGTGGTCCATATTACAGCACCTACAGATTTGTGAGCCATC
TCACACTTGGCACAAGCTACCAGGAAGTCACAACTCAACTTTGTGACCCA
TTTCCAGTGAGTGATCAGAGGCACAGGGGGCATACAGTTTATCTCCTGAC
CTTGCTTCTGACTTCTGGCTTCACTGTGTCTGACAGAGTGTCTTTCATTT
GCAGGTCAGCAATTCCTAACCTTAAAAATCCCTAGCATTCTACGTATGTA
CACACAAGCCTGTATCTCTTGTAATCAGATACTTGAAGTCGGTATAGACG
CGAGTACTCTGTGGGTTACTTTCTCAGGTCTGGCTGGTTAATCTCACAGC
TCTTCAAACCTGAAAGAGACCGAGCCCTGAGGCTTCATGATGTCATGGAT
GGTCTCTGACTTACAGTGATTTGCCATTGGACTTTTGACTTCCTGGTACT
TTGAACGCCGTTCATTTTGTTCCTTCCCCCATTCCTTTTCTCTAAGCATC
GCACCCAATCAACCTATTGTTCCCTACTTTTCACTTTTCTTCCTGCCCCC
CTTTTTTTAATGCTTCTTTATTATTTTTTTACCTCTCCGGTCTAATTCCC
CCACTTTTTTTCTCCCTCTTTTCCCCCATCTCCTTCTTTTATTCCTCCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_g04.b1 MSMg01no461_g04.b1 CHROMAT_FILE:
MSMg01no461_g04.b1 PHD_FILE: MSMg01no461_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:58 2005
         (271 letters)



>mm_chr18_76120976_76121646
          Length = 671

 Score =  458 bits (237), Expect = e-133
 Identities = 258/265 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatttatctggcttttaattcagtgttttactcgctgtccttcacattgccc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcttaatttaagtggcttttaattcagtgttttactcgctgtccttcacgttgccc 264

                                                                       
Query: 65  ttgctcatacaaatgtgcccattatagcctggtgtggggccacgatcctgccttctagcc 124
           |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct: 265 ttgctcatacaaatgtgcccattagagcctggtgtaggaccacgatcctgccttctagcc 324

                                                                       
Query: 125 tgagtgtgtcttcctggggaacaggtttcctttgggagaaggagtctcagtgtgggctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagtgtgtcttcctggggaacaggtttcctttgggagaaggagtctcagtgtgggctga 384

                                                                       
Query: 185 aaccagcccaccagggtagatcagacctggcagctcccttctgttaggaagtggtgagct 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccagcccaccagggtagatcagacctggcagctcccttctgttaggaagtggtgagct 444

                                    
Query: 245 acaacagctttccagactaggtgtc 269
           |||||||||||||||||||||||||
Sbjct: 445 acaacagctttccagactaggtgtc 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no461_g04.g1 MSMg01no461_g04.g1 CHROMAT_FILE:
MSMg01no461_g04.g1 PHD_FILE: MSMg01no461_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:58 2005
         (396 letters)



>mm_chr18_76295471_76296266
          Length = 796

 Score =  760 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctttgttaatatggactctcaggagggggtggtccatattacagcacctacagatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgctttgttaatatggactctcaggagggggtggtccatattacagcacctacagatttg 534

                                                                       
Query: 61  tgagccatctcacacttggcacaagctaccaggaagtcacaactcaactttgtgacccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgagccatctcacacttggcacaagctaccaggaagtcacaactcaactttgtgacccat 474

                                                                       
Query: 121 ttccagtgagtgatcagaggcacagggggcatacagtttatctcctgaccttgcttctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttccagtgagtgatcagaggcacagggggcatacagtttatctcctgaccttgcttctga 414

                                                                       
Query: 181 cttctggcttcactgtgtctgacagagtgtctttcatttgcaggtcagcaattcctaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cttctggcttcactgtgtctgacagagtgtctttcatttgcaggtcagcaattcctaacc 354

                                                                       
Query: 241 ttaaaaatccctagcattctacgtatgtacacacaagcctgtatctcttgtaatcagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttaaaaatccctagcattctacgtatgtacacacaagcctgtatctcttgtaatcagata 294

                                                                       
Query: 301 cttgaagtcggtatagacgcgagtactctgtgggttactttctcaggtctggctggttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cttgaagtcggtatagacgcgagtactctgtgggttactttctcaggtctggctggttaa 234

                                            
Query: 361 tctcacagctcttcaaacctgaaagagaccgag 393
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tctcacagctcttcaaacctgaaagagaccgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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