Query= MSMg01no462_e11.b1 MSMg01no462_e11.b1 CHROMAT_FILE:
MSMg01no462_e11.b1 PHD_FILE: MSMg01no462_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:14 2005
(523 letters)
>mm_chr18_52789079_52790001
Length = 923
Score = 1004 bits (519), Expect = 0.0
Identities = 522/523 (99%)
Strand = Plus / Plus
Query: 1 tctaaccatatcggctgggaaagagtttccatcatttggtgacatcaagcaaaatgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaccatatcggctgggaaagagtttccatcatttggtgacatcaagcaaaatgacaa 260
Query: 61 tagcttttgggtaacatatctgcataggatggtcataggtccacagcaataaaagcccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcttttgggtaacatatctgcataggatggtcataggtccacagcaataaaagcccac 320
Query: 121 agtgagaaacagcattttatcgtgtgagcataagtaaactatgaagtctccagactcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgagaaacagcattttatcgtgtgagcataagtaaactatgaagtctccagactcact 380
Query: 181 gcttgtcagtgaggaaatcaggaaataaagcctcattcattgaccggcacagtagaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgtcagtgaggaaatcaggaaataaagcctcattcattgaccggcacagtagaaatc 440
Query: 241 cagcgtgtctgtgggtcctggtctgcttttgactttctggccaaggacttgcttcagata 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcgtgtccgtgggtcctggtctgcttttgactttctggccaaggacttgcttcagata 500
Query: 301 cagctttgggtaaagagagcattattaacagtgttgatgtttaaaatgaatggtcttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctttgggtaaagagagcattattaacagtgttgatgtttaaaatgaatggtcttaat 560
Query: 361 gataagtttaagagttagccaggctctgggagactctgacctcctggggggtagaataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataagtttaagagttagccaggctctgggagactctgacctcctggggggtagaataga 620
Query: 421 gctaaggcacagtgctgagtctgttattaggtcagtggagggtatggctagaaaggtgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaaggcacagtgctgagtctgttattaggtcagtggagggtatggctagaaaggtgcc 680
Query: 481 tcaaggacacagtgacagccatctgtctcttgccaactgatgc 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaggacacagtgacagccatctgtctcttgccaactgatgc 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_e11.g1 MSMg01no462_e11.g1 CHROMAT_FILE:
MSMg01no462_e11.g1 PHD_FILE: MSMg01no462_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:15 2005
(499 letters)
>mm_chr18_52961594_52962492
Length = 899
Score = 920 bits (476), Expect = 0.0
Identities = 493/504 (97%), Gaps = 10/504 (1%)
Strand = Plus / Minus
Query: 1 atagtccatctttcaaatagtctgtgagtaaaataaagaaaaggcgaataacattgactt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 699 atagtccatctttcaaatagtctgtgagtaaaatgaagaaaaggcgaataacattgactt 640
Query: 61 ctggaagggtccaccaaaaaatcaagatttgcctcagctcacaaaagcattgggttatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctggaagggtccaccaaaaaatcaagatttgcctcagctcacaaaagcattgggttatct 580
Query: 121 ctaatgtagtgaccaaaattagctcacatctgggagtcattcttgcaaagcttgcctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctaatgtagtgaccaaaattagctcacatctgggagtcattcttgcaaagcttgcctcaa 520
Query: 181 actctgttttaattatttggtaatatagttaatgtgactgaaaggagccttacacaatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 actctgttttaattatttggtaatatagttaatgtgactgaaaggagccttacacaatcc 460
Query: 241 agtg-----tttttcgcttctattacatccataattacattcatattattagtgtctcat 295
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agtgacaac-----cgcttctattacatccataattacattcatattattagtgtctcat 405
Query: 296 aacctaacagttcaaatatctcagtagtcaaaattattacttttatgtggctactaaaag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacctaacagttcaaatatctcagtagtcaaaattattacttttatgtggctactaaaag 345
Query: 356 gttttaaaaattgacttcttggctttatgctgctgtaagtggaaaatgtcaaaaggcatg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gttttaaaaattgacttcttggctttatgctgctgtaagtggaaaatgtcaaaaggcatg 285
Query: 416 caaatggatcatttcaatcatctttttcagctaccagaattccaatatgtcattacaaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caaatggatcatttcaatcatctttttcagctaccagaattccaatatgtcattacaaat 225
Query: 476 gaatgtgagagtcccattattcaa 499
||||||||||||||||||||||||
Sbjct: 224 gaatgtgagagtcccattattcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
