BAC Information

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BAC

Clone NameMSMg01-463C17
Chromosome18 (Build37)
Map Location 40,467,674 - 40,467,900
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463C17.T7 (MSMg01no463_c17.b1)MSMg01-463C17.TJ (MSMg01no463_c17.g1)
ACCAG547884AG547885
length738738
length of high quality
(start - end)		374 (82 - 455)578 (79 - 656)
definitionCHROMAT_FILE: MSMg01no463_c17.b1 PHD_FILE: MSMg01no463_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:28 2005CHROMAT_FILE: MSMg01no463_c17.g1 PHD_FILE: MSMg01no463_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAC
AGCGCGGAATTCTCTGAACTCCCCGTACTTTCAGGTCCACATTTGCTCTG
GCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTG
GAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCC
ACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTTAGGA
ATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTT
CATGTTTAANTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCTCTGTATAG
CCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCA
GAAATACACCTGCCTCTGCCTCCCGAGTGCTGTGATTAAAGGCGTGCACC
ACCACGCCAGGCCCCATGTTTAATGTTTAGTAAACATTTAATAAACATTT
AATAAACATTGTTGAAGGTCTGAAGAGATGGATCAGCAGTCTAAGAGCAT
TTGACTTTTCTTGCAAAGGTCCTGAGTTTCATTCCCAGGAATTCCATGGT
GTCTTTGGAAACCTATGCCAACTTTTGGCGTGCGGTGCAAAAACGCTCGC
GTGTACTTTTTTTATTTTCACATACATTATACCTTCCTAAATCTATGTAC
ACCTAAGTATCGTGCATGAATTTGAACCATTTTAATTT

NNNNCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGTTCATGGGGAATAATTGC
AATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGC
CGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC
CCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGG
CTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGG
GGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAA
CCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACG
GAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGG
GTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGT
GGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCC
CCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGG
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG
ACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAA
AACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_c17.b1 MSMg01no463_c17.b1 CHROMAT_FILE:
MSMg01no463_c17.b1 PHD_FILE: MSMg01no463_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:28 2005
         (374 letters)



>mm_chr18_40467474_40468246
          Length = 773

 Score =  340 bits (176), Expect = 6e-98
 Identities = 215/228 (94%), Gaps = 1/228 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtccacatttgctctggctctggcaactgactgaaccaaacaattaggctcatacct 60
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 427 caggtccacctttgctctggctctggcaactgactgaaccaaacaa-taggctcatacct 369

                                                                       
Query: 61  agaactttggaaatggtaatggagttgataacacaccctaacagaaagaggaatgctcca 120
           ||| ||| | |||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct: 368 agatcttcgaaaatggtaatggagttgaaaacacactctaacagaaagaggaaggctcca 309

                                                                       
Query: 121 ctcactagtacactttcactagaagcctcgccctgtcagcagtttaggaatttgtaaagc 180
           |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 308 ctcactagaagactttcactagaagcctcgccctgccagcagtttaggaatttgtaaagc 249

                                                           
Query: 181 caatctggacaatatttaaatggtttggaatttctacttcatgtttaa 228
           |||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 248 caatctggacaatatttacatgatttggaatttctacttcatgtttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 773
Length adjustment: 9
Effective length of query: 365
Effective length of database: 764
Effective search space:   278860
Effective search space used:   278860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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