BAC Information

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BAC

Clone NameMSMg01-463G10
Chromosome18 (Build37)
Map Location 31,623,277 - 31,824,740
singlet/doubletdoublet
Overlap geneLOC383420, Slc25a46, Sap130
Upstream geneEG666111, EG666114, LOC433168, Rit2, EG666130, Syt4
Downstream geneLOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463G10.T7 (MSMg01no463_g10.b1)MSMg01-463G10.TJ (MSMg01no463_g10.g1)
ACCAG548062AG548063
length744736
length of high quality
(start - end)
243 (79 - 321)530 (78 - 607)
definitionCHROMAT_FILE: MSMg01no463_g10.b1 PHD_FILE: MSMg01no463_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:47 2005CHROMAT_FILE: MSMg01no463_g10.g1 PHD_FILE: MSMg01no463_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,824,501 - 31,824,740)(31,623,277 - 31,623,806)
sequence
NCAAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACACGATCG
CGCGGAATCTTTCCTTAGCAAGAAAAGAGGCACCCACAGAGTGGAAAGAG
AGAATCTACTCTGAAAAGCTGCCCTCTATCTCTGCTCATGCACTGCGGCA
CACACGCCACATAAATGCACACAGACAATGAACAACGATAAAACCTGCCT
CTTCTCCCCCTCCCAGCATCATCATTTTGGATGGGGTTCCTAGGCTCCTG
CTGCATCTTTCCCAGTGCTGCCATTACCACCTTCAACTCATTCCCACTCT
TAAGAAGGGAGGCAGGCATCTTATTCTTACACACATGTACAATCCCAGCA
TGTGGAGAGGAAGGTGTTAAGATCAGGAGTTCAAACTGTCTTAAGAACTC
AGTCATCTGGGTTAAACAAATATATAAAGAAAACAAGAATGAATGCATGA
CTACAGTTTAGCATATTTACAACCCAGTAACTGGTGAGACACGGCAGGTG
GACCATGTTTGAAGCCAGCCTCGAACTGTAAAGAATCTAAATCTAACAAA
TATTTGCCATTCAGAGATAGAACTGGTGGCTTCATGGCTAGGATCCCCAC
TACTTGTTACGCTGACGCAGGAAATCTAAATACTCCTAATCAATGGCAGC
TTATATAATTTTAGAGCTGAACCCCAAGCAATAAGTATTAATTCCCTTAC
TTTCTCAGAATTTTAAAAGTACCATAGTAAATATCTTGTTAATN
CTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAGAGTTCATGAGCACACA
AATGTCCCATCTCCGCAGCTCTTCAGCATGTTCACTATTTGTGCAATTCA
AATGGCATTTCTGAACCTATGAATACTGCTGCCTACCTATCTGAGCACTA
GCTTGCATGTGAATGTGATTATTTGTGACTGTGGTTGGACCATGAATCAC
ATTTTCTCTTCTCCAGTCTCAGCAGATTGAGCTGCAGTCCTGCCATTGGT
AACATTTTTGTTAACTTTCTATTGATATGTTGTGTTTCCTTCCATTTACT
TTGTTGCAATACTCATTAGAAGCTTACTCCCTTTTACATTGTTAAAATAT
TAAAATATGGTGTCTGCTACAACATGCTCTTTTTTAAGCAACATTAAACT
TGGTATAAGTATTATGTGCATTTTATCCTTGACTTTATCTAGACATTTAG
GACGTGTAACTATTAACTACTCCTGTTGTTATAGTTCATTGTTTTATCAT
AAAGTGTATATTTTTGTGGCCTATAAGATGTATGGCAGACCAATATGTTA
AAAAATTTCATATAGCCTTTTTTTAAACTTGGTATTGGTCTTTGTGAATT
TCATATCATGCACCCTAATCCACTCTTTTCTCCCTCCCCTCATATGTTGC
CCTCCAATTTCTTCAATCTTGCCCCCAACAGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_g10.b1 MSMg01no463_g10.b1 CHROMAT_FILE:
MSMg01no463_g10.b1 PHD_FILE: MSMg01no463_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:47 2005
         (243 letters)



>mm_chr18_31824301_31824943
          Length = 643

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcacccacagagtggaaagagagaatctactctgaaaagctgccctctatctctgctca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 ggcacccacagagtggaaagagagaatctactccgaaaagctgccctctatctctgctca 381

                                                                       
Query: 61  tgcactgcggcacacacgccacataaatgcacacagacaatgaacaacgataaaacctgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 380 tgcactgcggcacacacgccacataaatgcacacagacaatgaacaacaataaaacctgc 321

                                                                       
Query: 121 ctcttctccccctcccagcatcatcattttggatggggttcctaggctcctgctgcatct 180
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ctcttctccctctcccatcatcatcattttggatggggttcctaggctcctgctgcagct 261

                                                                       
Query: 181 ttcccagtgctgccattaccaccttcaactcattcccactcttaagaagggaggcaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcccagtgctgccattaccaccttcaactcattcccactcttaagaagggaggcaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no463_g10.g1 MSMg01no463_g10.g1 CHROMAT_FILE:
MSMg01no463_g10.g1 PHD_FILE: MSMg01no463_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:48 2005
         (530 letters)



>mm_chr18_31623077_31624006
          Length = 930

 Score =  978 bits (506), Expect = 0.0
 Identities = 524/530 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccagagttcatgagcacacaaatgtcccatctccgcagctcttcagcatgttcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccagagttcatgagcacacaaatgtcccatctccgcagctcttcagcatgttcacta 260

                                                                       
Query: 61  tttgtgcaattcaaatggcatttctgaacctatgaatactgctgcctacctatctgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgcaattcaaatggcatttctgaacctatgaatactgctgcctacctatctgagca 320

                                                                       
Query: 121 ctagcttgcatgtgaatgtgattatttgtgactgtggttggaccatgaatcacattttct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagcttacatgtgaatgtgattatttgtgactgtggttggaccatgaatcacattttct 380

                                                                       
Query: 181 cttctccagtctcagcagattgagctgcagtcctgccattggtaacatttttgttaactt 240
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 381 cttctccagtctcagcagattgagttgcagtcctgccgttggtaacatttttgttaactt 440

                                                                       
Query: 241 tctattgatatgttgtgtttccttccatttactttgttgcaatactcattagaagcttac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctattgaaatgttgtgtttccttccatttactttgttgcaatactcattagaagcttac 500

                                                                       
Query: 301 tcccttttacattgttaaaatattaaaatatggtgtctgctacaacatgctcttttttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccttttacattgttaaaatattaaaatatggtgtctgctacaacatgctcttttttaa 560

                                                                       
Query: 361 gcaacattaaacttggtataagtattatgtgcattttatccttgactttatctagacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaacattaaacttggtataagtattatgtgcattttatccttgactttatctagacatt 620

                                                                       
Query: 421 taggacgtgtaactattaactactcctgttgttatagttcattgttttatcataaagtgt 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggacgtgtaactatcaactactcctgttgttatagttcattgttttatcataaagtgt 680

                                                             
Query: 481 atatttttgtggcctataagatgtatggcagaccaatatgttaaaaaatt 530
           ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 atatttttgtggcctataagatgtatggcagaccattatgttaaaaaatt 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)