Query= MSMg01no463_m06.b1 MSMg01no463_m06.b1 CHROMAT_FILE:
MSMg01no463_m06.b1 PHD_FILE: MSMg01no463_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:18 2005
(216 letters)
>mm_chr18_11082106_11082721
Length = 616
Score = 368 bits (190), Expect = e-106
Identities = 214/230 (93%), Gaps = 14/230 (6%)
Strand = Plus / Plus
Query: 1 ctgatttagatcctaccccagaagcctttggcctctgagactttctgcttatcacttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatttagatcctaccccagaagcctttggcctctgagactttctgcttatcacttgtc 260
Query: 61 ttgtgctgtgagctggctagccttctctcctggagtcccaacaaacccagcagggtcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgctgtgagctggctagccttctctcctggagtcccaacaaacccagcagggtcttt 320
Query: 121 gttaatgattctggtgctctgggctagctctctgctgt-c-------------gatccca 166
|||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 321 gttaatgattctggtgctctgggctagctctctgctgttccagctgtctgggtgatccca 380
Query: 167 gaactctctgaatttctcataagataaattcttgtttcagagaaatcaga 216
||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 381 gaactctctgaatttctcagaagaaaaattcttgtttcagagaaatcaga 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space: 125649
Effective search space used: 125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no463_m06.g1 MSMg01no463_m06.g1 CHROMAT_FILE:
MSMg01no463_m06.g1 PHD_FILE: MSMg01no463_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:18 2005
(244 letters)
>mm_chr18_11271846_11272489
Length = 644
Score = 406 bits (210), Expect = e-118
Identities = 236/254 (92%), Gaps = 16/254 (6%)
Strand = Plus / Minus
Query: 1 catgtcaccaaatcagtgtcctgttgcacaagaaagctaactgataaatcagagaaactg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 378 catgtcaccaaatcagtgtcctgttgcacaagaaagctaagtgataaatcagagaaactg 319
Query: 61 acaccttttacaacgttacactggtttgagtaattctttcttacaagtggtacatggatt 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acaccgtttacaacgttacactggtttgagtaattctttcttacaagtggtacatggatt 259
Query: 121 agctttctcctcattgctgttcccttggaaaatagaaactaataagttaatcatattttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agctttctcctcattgctgttcccttggaaaatagaaactaataagttaatcata----- 204
Query: 181 tttt----------aaaaaaagcaagagtcaaaggtgtatagtccatctgaatttggcct 230
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 -tttaaaaaaaaaaaaaaaaagcaagagtcaaaggtgtatagtccatctgaatttggcct 145
Query: 231 gggtgggtggagaa 244
||||||||||||||
Sbjct: 144 gggtgggtggagaa 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
