BAC Information

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BAC

Clone NameMSMg01-464E15
Chromosome18 (Build37)
Map Location 12,003,376 - 12,003,486
singlet/doubletsinglet
Overlap geneCables1
Upstream gene1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8, LOC621998
Downstream gene6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464E15.T7 (MSMg01no464_e15.b1)MSMg01-464E15.TJ (MSMg01no464_e15.g1)
ACCAG548740AG548741
length795756
length of high quality
(start - end)
113 (76 - 188)235 (78 - 312)
definitionCHROMAT_FILE: MSMg01no464_e15.b1 PHD_FILE: MSMg01no464_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:00 2005CHROMAT_FILE: MSMg01no464_e15.g1 PHD_FILE: MSMg01no464_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAAATTTGCGGCAGCAAAGAAACACATTCGTACCCGCCGGGGAANCNG
GGCTGACTNCACCAGGAAANGGTTAGGAAAAAGAGCCTGCCGCTCCAGGG
CTAGTATTCCCCCTGCCCTGTGGTCTGCTGCGAAGGGCTAGGGTGTGTCT
GACCTGGGGGCATAGGATAATTTAATTGCAGAATTAGATGCAAAGAGCTG
GCGAATGTTAATGGATGTGCTTGGGGAGCAGGCATGTTTGAATGAGGGAG
CCAGCGAGCCAGTGACCGGCAATAAGACCTCAAGCCGCCCACACCGGCTA
TCTTTTTTTTTTGCCCCGAAGCACCGCCTCCCCAAACACGAGACTTTTTT
ATGCTGATATCATCCCCCTTGTATGATTTCCATTTGTGCCACTTATTACC
CTGTTTCCTTCTTATTGGTCCCTCAGACTACAGCAAGCCTCCCTCCTTTC
CATACCCTTGTTCTTCCTGAAGTGTCCCTTCTCCGTCTACATCTCTTCCC
AATTTTCCCACTGGCTCCTTAATACCCTTTTATCGTCCCCCTCCTCCCTT
TTTCTTATCTCGCTTTTCCTGTATCCTTTCCTCATCCGCTCTTTTTCCTC
CCCTATTTTCAACCCCCCCCCTTACCCTCTTTTTTCTTTGCCCTTTTCTC
CCCTCCTTTTTTTATTGTCTTCCTTTCCCCCATACCTCTGCCTCATATGA
CGCCTCACCCCATCTTACTTTTTTCCCCCTCTTTCCTTCTCCTCTAATTA
TCCATCGCTCCTATTCGCCTACTTTCCCTATCCTCTCCCTTCCTN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGAAGAATTCTTTGNTTAGCTCTGTACCCCATTTTTAA
TAGGGTTATTTGGTTTTCTGGAGTTCAACTTCTTGAGTTCTTTATATATA
TTGGATGTTACCCCCCCCCCCACACACACACCATATTTAGGATTGGTAAA
GATCTTTTCTCAATCTGTTGGTTGCCTTTTTGTCTTGTTGACAGTGTCCT
TTACCTTACAAAAGTTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTT
GATCTTACAGCATTTGTATTGGTGTTCTGTTCAGGAATTTTTCCCCTGTG
CCATATCTTCAAGGCTCTTCCCCCCTTTCATAAGTTTCAGTGTCTCTGGT
TTTATGTGGAGTTCCTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGA
TAAGAATGGATCGATTCGCATTCTTCTACATGATAACTGCCAGTTGAGCC
AGCACCATGTGTTTAAAATGCTGTCTTTTTTCCACTGGATGGCTTTAGCT
CCTTTGTCAAAGATCAAATGACCATAGGCATATGGGTTCATTTCTGAGTC
TTCAATTCTTTTCTATTTGATCTACCCTGTCTGTCACCGCATCTTTTACC
TGCTGCTTATAACTCAATCGCTCCTGTAAAACAGTTCGATGTCCATGCCA
CGCTTATCCCCCCCCACATGTCCCCTTTATCGTTTGAATATACTTCTTGT
TATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_e15.b1 MSMg01no464_e15.b1 CHROMAT_FILE:
MSMg01no464_e15.b1 PHD_FILE: MSMg01no464_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:00 2005
         (113 letters)



>mm_chr18_12003173_12003686
          Length = 514

 Score =  178 bits (92), Expect = 9e-50
 Identities = 106/114 (92%), Gaps = 7/114 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaagagcctgccgctccagggctagtattcccc----ctgccctgtggtctgctgcgaa 59
           ||||||||||||||||||||||||||||||   |    |||||||||||||||||| |||
Sbjct: 204 aaaagagcctgccgctccagggctagtatt---ctagtctgccctgtggtctgctgtgaa 260

                                                                 
Query: 60  gggctagggtgtgtctgacctgggggcataggataatttaattgcagaattaga 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctagggtgtgtctgacctgggggcataggataatttaattgcagaattaga 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 514
Length adjustment: 8
Effective length of query: 105
Effective length of database: 506
Effective search space:    53130
Effective search space used:    53130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)