BAC Information

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BAC

Clone NameMSMg01-464I12
Chromosome18 (Build37)
Map Location 25,978,387 - 25,978,776
singlet/doubletsinglet
Overlap genenone
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241
Downstream geneLOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464I12.T7 (MSMg01no464_i12.b1)MSMg01-464I12.TJ (MSMg01no464_i12.g1)
ACCAG548925AG548926
length849742
length of high quality
(start - end)
---508 (78 - 585)
definitionCHROMAT_FILE: MSMg01no464_i12.b1 PHD_FILE: MSMg01no464_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:20 2005CHROMAT_FILE: MSMg01no464_i12.g1 PHD_FILE: MSMg01no464_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCAAAAATTGCGGCCGGAAAAAGAGNACAATTTCGTACCCGCTCGNGG
AANNCNGNNGTAACTTCATCAGCGNGAGNGACCAGCAGCAGGCCCCATTG
CTAGCTGGTGTGTGTGTGTGCGTGAGAGTGTGCGAGTGTGTGCGCGAGTC
TTACCTTTTCACCTATCTAGGGACTAAACTAACCCATTATCACCCTTACT
CCCCAACCATACTCCTTTCATACTAATACCTCAAACCACAATAGATTTTT
ATACAAACTAAATAACATTATAAAACATATAAAAAAATAAAACACTCAAC
ACCCCCCAAAATTTTTTTTTATAAACCAAACCCCAACCATAAAAAATACA
AAAACCTCTTATAAACCCTTAAACCACCCACCCCCCCCCCTTATTTTATC
TCTATCCAAATCTACTAATCTTAACTACCATACATAATCTATTAAAACTA
AAACTTCTATTAAACTCCCACCCACTTAAAATACATAACCTAACAACCTA
ACACCATAACATCCCACCAAAAAAACCACTTCATACACAATATCCACATC
TACTACTCATTACATCAATCCACATACCTCCATAATAACCACATTTATCA
ACAATTAAAATAAATACTAAATTTTCGCCATACCCAAACAAATTACTTTA
ACCCACTCCTTCTAATTCATAATTTCCCTCACACCCATCTCAATTATCTA
ACTAACCCTACTTCATCACTTTCCATATACACTACCACTATTTTTCTTAT
CCTTCTCCTCAATACCCCCATATTCCTATCAACATTCCTTCCTCTCACCT
TACCCCCTATTATTTTCCCATCTATATTACCCCCAACCATTAAAACAAC
NGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGGATGTCTCGAAGAAAAG
TTTTGGGAAATAGTCACCCATAGTATGAGCATGAGTGTAAGAGGAGCCAA
GGTTAAGAAAGCCCAGTAGGAGGGATCTAGACCCAAAAAAATTTTGTATA
AGGTCTCTAGGCCAGGTCTTAACCTTCTGAATGCTGTGACCCTTTGATAC
ATTTCCTCATGTTGTAGTTTATTTCATTGCTACACTAAAATGGCAATTTT
GCTACTGTTATGATTTGNATANATTTATCTTATATGCAGGATGATCTGAT
ATGCCATCCCCTAAGGGATTGCAACTCACAGGTTAAGAGCTGCTGTTTTA
GGCAAAGGCTCACAACTACCTTAGGCTTTGTGAACCACATACAGAGAACC
TCACGCCCCAAGGAGTGGTTATCCATCATTTGAAGGAATATGTCTTTTCC
TTCAAATATATATGGGGTATGAAGTGCAGAATTAGACTTTCTGAAAATAT
AATCAGTTGAAGTCAAGTTATGGGTCAGGAAAATAAAAAGGGGAGAACTG
TATGTGTACCTAAATCATTAGTGGTTGCATAACTATTTCTTATTTATATT
GCTCAGGTTGTAACCTGGTTCCCATGTCTATCGTGTACCAACTTGGGCGT
TTGGTGGCTATGGCGGAATTTTTGATTTCTGTCTTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_i12.g1 MSMg01no464_i12.g1 CHROMAT_FILE:
MSMg01no464_i12.g1 PHD_FILE: MSMg01no464_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:20 2005
         (508 letters)



>mm_chr18_25977869_25978776
          Length = 908

 Score =  679 bits (351), Expect = 0.0
 Identities = 381/393 (96%), Gaps = 7/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 120 tataaggtctctaggccaggtcttaaccttctgaatgctgtgaccctttgatacatttcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tataaggtctctaggccaggtcttaaccttctgaatgctgtgaccctttgatacatttcc 849

                                                                       
Query: 180 tcatgttgtagtttatttcattgctacactaaaatggcaattttgctactgttatgattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tcatgttgtagtttatttcattgctacactaaaatggcaattttgctactgttatgattt 789

                                                                       
Query: 240 gnatanat-t---tatcttatatgcaggatgatctgatatgccatcccctaagggattgc 295
           |  || || |   |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 788 g--ta-atataaatatcttatatgcaggatgatctgatatgccatccccaaagggattgc 732

                                                                       
Query: 296 aactcacaggttaagagctgctgttttaggcaaaggctcacaactaccttaggctttgtg 355
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 731 aactcacaggttaagagctgctgttttaggcaaaggctcacagctaccttaggctttgtg 672

                                                                       
Query: 356 aaccacatacagagaacctcacgccccaaggagtggttatccatcatttgaaggaatatg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaccacatacagagaacctcacgccccaaggagtggttatccatcatttgaaggaatatg 612

                                                                       
Query: 416 tcttttccttcaaatatatatggggtatgaagtgcagaattagactttctgaaaatataa 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 611 tcttttccttcaaatatatatggggtatgaagtgcagaattagactttctgataatataa 552

                                            
Query: 476 tcagttgaagtcaagttatgggtcaggaaaata 508
            ||||||| ||||||||||||||||||||||||
Sbjct: 551 gcagttgaggtcaagttatgggtcaggaaaata 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)