BAC Information

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BAC

Clone NameMSMg01-464J01
Chromosome18 (Build37)
Map Location 56,985,992 - 56,986,351
singlet/doubletsinglet
Overlap geneMarch3
Upstream geneLOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1
Downstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464J01.T7 (MSMg01no464_j01.b1)MSMg01-464J01.TJ (MSMg01no464_j01.g1)
ACCAG548950AG548951
length801792
length of high quality
(start - end)
272 (51 - 322)360 (82 - 441)
definitionCHROMAT_FILE: MSMg01no464_j01.b1 PHD_FILE: MSMg01no464_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:22 2005CHROMAT_FILE: MSMg01no464_j01.g1 PHD_FILE: MSMg01no464_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTCTTTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAAT
CCGCGGAATTCAGTGGTTTTTCCTTTTCTATATTTTGACCAATTGTGGAT
GTTTGTAATAGTCTCCCCCCCCCCCAAAAAAAAAACCAACCCTCTGATTA
GAGCTAAGAGGTATAAAGGGGATCTGTGGGTATAAGGATACGTATTTAGA
AAACAGAAATTTTGTTTGGGAAAGAATAGTCAGTTCCTTTTAGGGTCAAT
GATAGCCACCAGCCACAGGTAGTTGGCTAGGTTTACAGTACCAGACATGA
ATTCCCTCCTAACAAGTGGGCTTCATGTTTAATTAGTTTTTATTAGGCAG
CCCATGGCTCTTGGGAGGGTTTTTACCCCAACTGCTATATCTCTACCTCT
ATCTCTATCCCTATATCTCTATATCTAATACTCTATCCCTATCTCTAGTT
GGGTCTGCCATCCACTAGTTAGAATATGTAGTACTTGCCTCCCTGAGTCC
GGCTTACCTCTACCAGTATAATATTTCCTCTATCTCCCCCCATTTTACCC
TTCCCCCTGAAAATTCTATTATTTTTGCTCATACCCTGCCTATAAATCCC
CTTTGTGGTATCTATCATCTTCTCCCTATCTCTTCCTTGATCGCACGCTT
CAAGCCCGGCTTTCATATTTATCTCACCCCCCTTTGGCCTATAGCAGCGG
CTCCTCTGCCCTTCTTGGCGCGTATCTCTCTTTCTTATCTTCCTTTATTA
TATTTACTCTCTACCCCCCATATATACTTCTAATCCCCATTTACTATGTA
N
TTTTTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACCTGTACTTCCATCTC
AGCATTTCTGTAAGCCAGGCACCTTCACCTTGTTTATACAGTGCTTGTGC
AGCCCTACTACATACATGTTTACTAGGTACTCGGGAGGGATACACTGCTT
TAAGAAACAAAATCGGGGCCTTTGCAACTCTTGGATCTAGGTCATAAGAA
TATTTACTCTCCAAGGAGACTAGACTATACTTTATCATGGCTTTTATTAA
GTTCTACTTTCAAGATGACATAAAATATATGCCCTAAGGTAACCCATGGC
AGTGCTTATGCGTGGAAACAATCCTGGCTGATTCTTCCAACTCTGCATGT
TCATAAACTGGACTCACTTCTTAAATTCACAAATGATGATCACTGTGGCT
AATCCAGGAACAATTTTCTGTTGTAACCACGTCTGACCCTCAGCATCTTT
TTACAGCTTTTAATTGGTTTCGAAGCACCTGGTACTAACAGCCTGTTAGA
ATTACCCTTTACTTTATTTCTGCTCTCGACCTCCTGACGTTTACGTTCCC
ATCACTCTTTGGAATTCTCTTTCTTTCTTCACTATGTCATACGCCTTCTT
CCTATCATGTCCTGTGGGACTTTCTCCATTTTAGCCCCATTATTTCTTTT
TCCTTTATCCCTCTTTTCTCCTATTCCCCACTTTTCTCCTCCCTTCCTAC
CCTCTTTCTTATCGCCTTCTCTTCCACTGCTTTCTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_j01.g1 MSMg01no464_j01.g1 CHROMAT_FILE:
MSMg01no464_j01.g1 PHD_FILE: MSMg01no464_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:23 2005
         (360 letters)



>mm_chr18_56985792_56986551
          Length = 760

 Score =  681 bits (352), Expect = 0.0
 Identities = 358/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacctgtacttccatctcagcatttctgtaagccaggcaccttcaccttgtttatacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacctgtacttccatctcagcatttctgtaagccaggcaccttcaccttgtttatacag 260

                                                                       
Query: 61  tgcttgtgcagccctactacatacatgtttactaggtactcgggagggatacactgcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttgtgcagccctactacatacatgtttactaggtactcgggagggatacactgcttt 320

                                                                       
Query: 121 aagaaacaaaatcggggcctttgcaactcttggatctaggtcataagaatatttactctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaacaaaatcggggcctttgcaactcttggatctaggtcataagaatatttactctc 380

                                                                       
Query: 181 caaggagactagactatactttatcatggcttttattaagttctactttcaagatgacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggagactagactatactttatcatggcttttattaagttctactttcaagatgacat 440

                                                                       
Query: 241 aaaatatatgccctaaggtaacccatggcagtgcttatgcgtggaaacaatcctggctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatatatgccctaaggtaacccatggcagtgcttatgcgtggaaacaatcctggctga 500

                                                                       
Query: 301 ttcttccaactctgcatgttcataaactggactcacttcttaaattcacaaatgatgatc 360
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttccagctctgtatgttcataaactggactcacttcttaaattcacaaatgatgatc 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)