BAC Information

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BAC

Clone NameMSMg01-464M02
Chromosome18 (Build37)
Map Location 25,978,430 - 25,978,776
singlet/doubletsinglet
Overlap genenone
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241
Downstream geneLOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464M02.T7 (MSMg01no464_m02.b1)MSMg01-464M02.TJ (MSMg01no464_m02.g1)
ACCAG549095AG549096
length723752
length of high quality
(start - end)
---466 (79 - 544)
definitionCHROMAT_FILE: MSMg01no464_m02.b1 PHD_FILE: MSMg01no464_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:37 2005CHROMAT_FILE: MSMg01no464_m02.g1 PHD_FILE: MSMg01no464_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGGAATCAAAAATTAGGGCGCAATACGAACTACTAATCGNGACCTCCG
CGGAATTCTGCTGATTGCCTCTATAAGAGTNGAGTNGACCAAAGCTGTTT
GGCCCCAAATTGCTAAAGCTGGATGTGTTGTTGTGATGCCGCTGTTGTAG
ATGTTGGAAGTTATTCCCCATCCCCCCCCCTACCCGCTTCTTCGCTTACC
ATCCTTCACTTAACGGCCTCTACATTCTTTTTCGCCNTNCCCCNCCCAAC
CCTACNCTAGATCAAAACAGACACAATTNTCTCCACAACACATCCCCCCC
ATTCGAAAGCTTTTTTTTTTTCTTAAAAATAACCCCCCCCCCTCCCATAT
TTTCTCATCAGAATCTCTACACTAACTTCATTCCTACTCACACTCCCCCT
CTCTCTNCCCACAGCCACACCCAGAAAAAATTTTTTTTTTTCTTTATTTT
ACACCCCACCAATAACATAACATCCACATGTCCACCTAAGAACTCGACGT
AAGACCCCGACATCCAATAATCAGTATTAGAAGAATTCATTCCTTTTATT
TCACCTAAACACCCTACAATACCACATGCGCATTAAATAACATACCTCCA
CCATTTTCCNCTCCCGTAAGCCCCGTTGATGTAATGCCACTNTGCAGTCT
AACAGAAGCAGCCAGAACGAAGCNTAAATCATNCCTTTCCCCTTTTAAAC
AAGAGAAGAGAGGAATGAAGAGT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGGATGTCTCGAAGAAAA
GTTTTGGGAAATAGTCACCCATAGTATGAGCATGAGTGTAAGAGGAGCCA
AGGTTAAGAAAGCCCAGTAGGAGGGATCTAGACCCAAAAAAATTTTGTAT
AAGGTCTCTAGGCCAGGTCTTAACCTTCTGAATGCTGTGACCCTTTGATA
CATTTCCTCATGTTGTAGTTTATTTCATTGCTACACTAAAATGGCAATTT
TGCTACTGTTATGATTTGTAATATAATTATCTTATATGCAGGATGATCTG
ATATGCCATCCCCAAAGGGATTGCAACTCACAGGTTAAGAGCTGCTGTTT
TAGGCAAAGGCTCACAACTACCTTAGGCTTTGTGAACCACATACAGAGAA
CCTCACGCCCCAAGGAGTGGTTATCCATCATTTGAAGGAATATGTCTTTT
CCTTCAAATATATATGGGGTATGAAGTGCAGAATTAGACTTTCTGAAAAT
ATAAGTAGTTGAAGTCAAGTTATGGGTCAGGAAAATAAAAAGGGTAGAAC
TGTATGTGTATCCTAATTCCTAGTGGGTGTCTATCTATTTCTTATCTAGA
ACTGCTTTTTCGTGAACCCTGGTTTCCTACGTTTAACCGCGAAACAATCC
TGTTGCTTTGTTTTTTAGGGCGCACCCTTCGTCCCTCTGTTTTTCTTTTG
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_m02.g1 MSMg01no464_m02.g1 CHROMAT_FILE:
MSMg01no464_m02.g1 PHD_FILE: MSMg01no464_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:38 2005
         (466 letters)



>mm_chr18_25977911_25978776
          Length = 866

 Score =  656 bits (339), Expect = 0.0
 Identities = 345/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 120 tataaggtctctaggccaggtcttaaccttctgaatgctgtgaccctttgatacatttcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tataaggtctctaggccaggtcttaaccttctgaatgctgtgaccctttgatacatttcc 807

                                                                       
Query: 180 tcatgttgtagtttatttcattgctacactaaaatggcaattttgctactgttatgattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcatgttgtagtttatttcattgctacactaaaatggcaattttgctactgttatgattt 747

                                                                       
Query: 240 gtaatataattatcttatatgcaggatgatctgatatgccatccccaaagggattgcaac 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtaatataaatatcttatatgcaggatgatctgatatgccatccccaaagggattgcaac 687

                                                                       
Query: 300 tcacaggttaagagctgctgttttaggcaaaggctcacaactaccttaggctttgtgaac 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 686 tcacaggttaagagctgctgttttaggcaaaggctcacagctaccttaggctttgtgaac 627

                                                                       
Query: 360 cacatacagagaacctcacgccccaaggagtggttatccatcatttgaaggaatatgtct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cacatacagagaacctcacgccccaaggagtggttatccatcatttgaaggaatatgtct 567

                                                          
Query: 420 tttccttcaaatatatatggggtatgaagtgcagaattagactttct 466
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttccttcaaatatatatggggtatgaagtgcagaattagactttct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)