BAC Information

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BAC

Clone NameMSMg01-465J07
Chromosome18 (Build37)
Map Location 79,825,325 - 79,825,839
singlet/doubletsinglet
Overlap genenone
Upstream geneSetbp1, LOC100039242, LOC100039250
Downstream geneLOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465J07.T7 (MSMg01no465_j07.b1)MSMg01-465J07.TJ (MSMg01no465_j07.g1)
ACCAG549727AG549728
length740751
length of high quality
(start - end)
520 (42 - 561)392 (71 - 462)
definitionCHROMAT_FILE: MSMg01no465_j07.b1 PHD_FILE: MSMg01no465_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:44 2005CHROMAT_FILE: MSMg01no465_j07.g1 PHD_FILE: MSMg01no465_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTCCGGTGAAAACTTATTTTCATTTATTATCAAAGGCCCGATCT
ATTAGAAGGAGAGTTGATAAATGGGCTCTATTAAAACGCCAGATTTCCCA
CTCCAACAAAGATAATGTCAAATGCGATAACAGAATAAGAGAGAAAAAAG
TTGTAAAACTCATAGGTAGTAAGTACCCATCTAAATACAAAAACACATTG
TATAGCTCAAGAGTAGAAAACAAAAAAGTCAAATATAAAGAAGAAAAGTC
TGTGACTGAAGACAAATATTAGTATAACCATGAATGATTTACAACATCCT
ACAGCATTATGGAAATTCAAACAGGACAGGAGGATACAGATGTATCAGCA
TCACCAACAATCCAAAACCAACAGGAAATGCCGATGAATCCATGAAACAA
TAGCACTTTTTTTCTTTTCATCGCTTGAGTAAATGTGAAATGGTGCAGCT
ACCTGGGAAGTCTCTGTGTGGTCCTTTCTTAAAACTAAACTTATGACCAC
CATTGATCTANAAATCAACCAGCTTGGCAGTTATACAGATGGTGGCGNAC
GCCTTTAATCCCAGCTCTCCGGAGGCCAAGGCGGCAGAATTCTGAGTTTG
AGGCCCTCCCGGGCCACCAAGGGAGCCCAGGACGGCCAAAGTTTTTCGAA
GAAACCTTGGCTCTAACCTCCTCCCCCCTAAAAAAAATTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGCCCATGGCCAGCTCAAGGACTTTCTA
GGATGTTGGAACACTGGGCAAGGCTTAGCTATGTCAGAATTCAATCTTAA
AAGGCACTTACAATAAGATAATACTAAAAGAGAGCACGTGGATTCACACA
CCAGACTAACTCGGGAATAGTGTATGAGTATATGAGTTAATGAGAACGCC
AGAACTCAAAGAGGTGAGCTTCCATGAAACTCTTTGCCTCGTGATCGCTT
CCAGGCCTCACAGTTTGTCAAGCTGACTCGACCGGAGTGCGTGGCAGAGC
TTCATGGAGGAAAAAGCATTTAAGGGGAATGCTTGCTTAGAAAAAAAATT
TATTTACATTTAAAATGATCAGTACCTAGACNCAATCACATAATGTAGAT
ATAGGCTTGTATTCATTGGCATATTATATCCATCCATGGAGAAATCAGCT
TCCATAAAGAAATTTAGTTTCCGACTTGTCAAATGTCCTTAATCTCCGAG
ATGACCTANACCCATTATCCTTTGTATGGGTATTGTTCTCTTTTATGCCG
ATGCTTTTTTTCCTTTCTAGTGTATCCGGTCACCCACTATGGTCTTTNTT
GTTTAAATTTGGCGAGAGACGCGCCCAGGTACTCTCTTTTTGGTTTAACC
ATACCGTGTTGCCCCCCCCCTTCTTGCCCCTTTTTGTTATTACCGCTCCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_j07.b1 MSMg01no465_j07.b1 CHROMAT_FILE:
MSMg01no465_j07.b1 PHD_FILE: MSMg01no465_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:44 2005
         (520 letters)



>mm_chr18_79825198_79826117
          Length = 920

 Score =  938 bits (485), Expect = 0.0
 Identities = 508/517 (98%), Gaps = 4/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttg--tttccggtgaaaacttattttcatttattatcaaaggcccgatctatt 62
           ||||||||||  | |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattctttggatat--ggtgaaaacttattttcatttattatcaaaggcccgatctatt 585

                                                                       
Query: 63  agaaggagagttgataaatgggctctattaaaacgccagatttcccactccaacaaagat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agaaggagagttgataaatgggctctattaaaacgccagatttcccactccaacaaagat 525

                                                                       
Query: 123 aatgtcaaatgcgataacagaataagagagaaaaaagttgtaaaactcataggtagtaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aatgtcaaatgcgataacagaataagagagaaaaaagttgtaaaactcataggtagtaag 465

                                                                       
Query: 183 tacccatctaaatacaaaaacacattgtatagctcaagagtagaaaacaaaaaagtcaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tacccatctaaatacaaaaacacattgtatagctcaagagtagaaaacaaaaaagtcaaa 405

                                                                       
Query: 243 tataaagaagaaaagtctgtgactgaagacaaatattagtataaccatgaatgatttaca 302
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 404 tataaagaagaaaagtctgtgactgaagacaaataaaagtataaccatgaatgatttaca 345

                                                                       
Query: 303 acatcctacagcattatggaaattcaaacaggacaggaggatacagatgtatcagcatca 362
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 344 acatcctacagcattatggaaattcaaacaggacagggggatacagatgtatcagcatca 285

                                                                       
Query: 363 ccaacaatccaaaaccaacaggaaatgccgatgaatccatgaaacaatagcacttttttt 422
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 284 ccaacaatccaaaaccaacaggaaatgccgatgaagccatgaaacaatagcacttttttt 225

                                                                       
Query: 423 cttttcatcgcttgagtaaatgtgaaatggtgcagctacctgggaagtctctgtgtggtc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cttttcatcgcttgagtaaatgtgaaatggtgcagctacctgggaagtctctgtgtggtc 165

                                                
Query: 483 ctttcttaaaactaaacttatgaccaccattgatcta 519
           |||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctttcttaaaactaaacttatgaccaccattgatcta 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)