Query= MSMg01no465_j20.b1 MSMg01no465_j20.b1 CHROMAT_FILE:
MSMg01no465_j20.b1 PHD_FILE: MSMg01no465_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:47 2005
(438 letters)
>mm_chr18_63201161_63201998
Length = 838
Score = 832 bits (430), Expect = 0.0
Identities = 433/434 (99%)
Strand = Plus / Minus
Query: 5 gaattcatgccattacactttgtgcatgcataaaattattggaaagcattctatcaaatg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaattcatgccattagactttgtgcatgcataaaattattggaaagcattctatcaaatg 579
Query: 65 atctttagacttgatgaatacggtgtgtataaagcatacattaaatttcatgttgaaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atctttagacttgatgaatacggtgtgtataaagcatacattaaatttcatgttgaaact 519
Query: 125 tgaattctatacatgacgtatttcatttcatatacaagtaatctaaaccatgaaggccat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgaattctatacatgacgtatttcatttcatatacaagtaatctaaaccatgaaggccat 459
Query: 185 caacatctcggacacttcccaagtgtttttgatgaagaataatcaacacacacagcggag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caacatctcggacacttcccaagtgtttttgatgaagaataatcaacacacacagcggag 399
Query: 245 gcatgtgcagatacacaacacaagagatcacacgggtgtaagtcagtgatttggaaaagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gcatgtgcagatacacaacacaagagatcacacgggtgtaagtcagtgatttggaaaagg 339
Query: 305 tgcacaccgactggtacctaatcatgcttattttcacaggatgttccatgatgatgagct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcacaccgactggtacctaatcatgcttattttcacaggatgttccatgatgatgagct 279
Query: 365 tgaggagtctgagaagttctacgtggaccagccccggtttttgctgctattctatgccat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgaggagtctgagaagttctacgtggaccagccccggtttttgctgctattctatgccat 219
Query: 425 gtataacaccctgg 438
||||||||||||||
Sbjct: 218 gtataacaccctgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_j20.g1 MSMg01no465_j20.g1 CHROMAT_FILE:
MSMg01no465_j20.g1 PHD_FILE: MSMg01no465_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:47 2005
(450 letters)
>mm_chr18_63057555_63058401
Length = 847
Score = 839 bits (434), Expect = 0.0
Identities = 445/450 (98%), Gaps = 3/450 (0%)
Strand = Plus / Plus
Query: 1 agttcccagaatgccttcttacagatgccttgaacaggacatgacccatataacaagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcccagaatgccttcttacagatgccttgaacaggacatgacccatataacaagacc 260
Query: 61 tgacttcttttgttggatagaaccgtcctccaagtccacagccccattcctcaccctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttcttttgttggatagaaccgtcctccaagtccacagccccattcctcaccctggg 320
Query: 121 ctcagatccattggctgataaacaactccacctatgcccagaatttttggctgaggaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagatccattggctgataaacaactccacctatgcccagaatttttggctgaggaaac 380
Query: 181 ctcaatccacttgcacagggcccttcaacataaatacagagataaagtccttgaaagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaatccacttgcacagggcccttcaacataaatacagagataaagtccttgaaagtta 440
Query: 241 ttatgttgattatctgtgccaaatttacatttataaatagaacaatgaggattgtgagtt 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagggtgattatctgtgccaaatttacatttataaatagaacaatgaggattgtgagtt 500
Query: 301 aaacttgaactcctaaaactagatttttaagatttgtaagtttaatcggtgaagtattca 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacttgaact---aaaactagatttttaagatttgtaagtttaatcggtgaagtattca 557
Query: 361 ttcatttgaagccaattatcccataaataaccttttcagcatataaaatcattgacccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcatttgaagccaattatcccataaataaccttttcagcatataaaatcattgacccag 617
Query: 421 cctttaataaaaagaattctataaaaccgt 450
||||||||||||||||||||||||||||||
Sbjct: 618 cctttaataaaaagaattctataaaaccgt 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 847
Length adjustment: 10
Effective length of query: 440
Effective length of database: 837
Effective search space: 368280
Effective search space used: 368280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
