Query= MSMg01no466_d15.b1 MSMg01no466_d15.b1 CHROMAT_FILE:
MSMg01no466_d15.b1 PHD_FILE: MSMg01no466_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:38 2005
(408 letters)
>mm_chr18_20233926_20234733
Length = 808
Score = 712 bits (368), Expect = 0.0
Identities = 398/408 (97%)
Strand = Plus / Plus
Query: 1 tgaaagctgttatgagcattggtcatatagtgaaaccataaaattgacttgtcactgacc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaagctgttatgaccattggtcatatagtgaaaccataaaattgacttgtcactgacc 260
Query: 61 gaaacttccaccatctctgtcaagcttacctttactggttctaaggctaaagtctattca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gaaacttccaccatctctgtcaagcttacctttactagttctaaggctaaagtctattca 320
Query: 121 aggaagcacagaaaattatttgggattgtattgtatataaggagacagaattttgatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagcacagaaaattatttgggattgtattgtatataaggagacagaattttgatgaa 380
Query: 181 ctaaaagtgaaaccatgccaaaggctataaaactgtaagttaggtttgagtctgtcagac 240
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctaaaagtgaagccatgccaaaggctataaaactgtaagtcaggtttgagtctgtcagac 440
Query: 241 agaggctactggagcagtatcatgccattcaaggggaattttcatggagcaggaaacaaa 300
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggcaactagagcagtatcatgccattcaaggggaattttcatggagcaggaaacaaa 500
Query: 301 gcacatcgaatacaatacactgctttttaatcagtgtacactgacaaaagacgtttccat 360
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 501 gcacatcgaatacaatacactgcattttaatcagtgtacactgacaaaagttgtttccat 560
Query: 361 tcagtgttttgacttaatgcaacaattaaaggttcaacaccatcccca 408
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tcagtgttttgacttaatgcaacaattaaaggttcaataccatcccca 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_d15.g1 MSMg01no466_d15.g1 CHROMAT_FILE:
MSMg01no466_d15.g1 PHD_FILE: MSMg01no466_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:38 2005
(505 letters)
>mm_chr18_20563352_20564251
Length = 900
Score = 762 bits (394), Expect = 0.0
Identities = 471/500 (94%), Gaps = 13/500 (2%)
Strand = Plus / Minus
Query: 10 ttaaaggatacataggttcacaaacaaaaataaaatatacagcctgtcagatcagtttca 69
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 700 ttaaaggatacgtaggctcacaaacaaaaataaaatatacagcctatcagatcagtttca 641
Query: 70 gtaggctgtcctttatcattcatctcatgtatac--atatgttattgaagaaggaattat 127
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 640 gtaggctgtcctttatcattcatctcat-t-tacatatatgttattgaagaaggaattat 583
Query: 128 aaaaacacatttaaaaacaactccctcccaaatccccactacccacccctccccaaacaa 187
||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||
Sbjct: 582 aaaaacacatttaaaaacaaccccctccc--at-cccactacccaccccttcccaaacaa 526
Query: 188 aaaccctaaacaataagatacccaaccagagacgacagagcccatttta--cttgtttgt 245
||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct: 525 aaatgctaaacaataagatacccaaccagagaggacagagcccattttagtc---tttg- 470
Query: 246 gttgctggaaagttgtctttttcttacctgagttgtcaacatattctataacattggcat 305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 469 gttgctggaaagttgtctttttcttacctgagttgtcaatatattctataacattggcat 410
Query: 306 taccaggtggcatttgtggcacacagatggtggttatcccctaaaagacaaaagacaaca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taccaggtggcatttgtggcacacagatggtggttatcccctaaaagacaaaagacaaca 350
Query: 366 ttttcccatttgtaatgagccttttcttcctctacttgtatatttttattctaaaattac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttttcccatttgtaatgagccttttcttcctctacttgtatatttttattctaaaattac 290
Query: 426 cacataattcctaaaagaagactatttaggatcattttgaattcaacttgaaagttgaat 485
|||| | ||| ||||||||||||||||||||||||||| |||||||||| |||| |||||
Sbjct: 289 cacagagttcataaaagaagactatttaggatcattttaaattcaacttaaaagctgaat 230
Query: 486 ctcatttttgtcttgtctgg 505
||||||||||||||| ||||
Sbjct: 229 ctcatttttgtcttggctgg 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 900
Length adjustment: 10
Effective length of query: 495
Effective length of database: 890
Effective search space: 440550
Effective search space used: 440550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
