BAC Information

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BAC

Clone NameMSMg01-466F10
Chromosome18 (Build37)
Map Location 41,392,720 - 41,393,152
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466F10.T7 (MSMg01no466_f10.b1)MSMg01-466F10.TJ (MSMg01no466_f10.g1)
ACCAG550308AG550309
length1,161739
length of high quality
(start - end)
---482 (84 - 565)
definitionCHROMAT_FILE: MSMg01no466_f10.b1 PHD_FILE: MSMg01no466_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:47 2005CHROMAT_FILE: MSMg01no466_f10.g1 PHD_FILE: MSMg01no466_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGCTGGCGGGCGGCTAGGATTTTACCNAATATTATATCAATACAGT
GATCTTCTTCCCAATATAGATAGGCCTGGCTGGGGGTCGGTCCTTCTTTC
CCCATTGACGTTGCTATCACATAATAATAGAGCACAAATAACCCCGAGAA
CGGAGGACTGTACTCGCCTACTATTCTAATATCTGCCCCGTCCCGCGCTA
GAGCCCCACGCCAGCTCGTAAGACGCACGAAGACAGGTAAAGATAACAAA
AATAAAGCGCAACCCATATATAACCTCCTCATTATTCGCCGGGCGACGTA
TGAGATACATGCCTGTTGATTAGGATTGGAATGAGATAAAAAGGAGAGTA
AAATAAAATAATAGACAACAAAACATAGGTGTGAGTGTATTCGATTTCTT
GATTTGCTCCGACTGTATCGCGAGGCAGGTATAAGAAAGGCGAGTAGAGG
CCCTATTTTCTATTCATATTTAGGTGTGTGGGGGTGATATGTGACGGGGA
CTAGGAAGTAGTCGATGTACGTACTAGGTCGATTGCGTATGACTATGGCT
CTGTACACTAGCATATAGTCAGTTCTTACCTTTTGCCCATTTTTCCCCCT
ACCCATCATTTCCTTAATACCCAGTATCATTAGGCGGGGAGATTGAGTCT
TAGTTATTAGAATGTTAACCCGGCAAAACAGTTATTATCCTTCCTCACCT
GCATTTATAACTCATGTCTTCTCTGCGCCCCGGGACTTATATGTAGTAGG
TGTTCATTTTGTTGTCTCAATCGTGTTTAGGCCCGCTTATTCCGCGCTTG
CTATTATTAATATAGTCCATATATTTTATTTAGCTGACTTTATATACGGC
CTTCACACGACGTGTAGATACCCCGTAACGACACGATCTCTGTTCTTCGT
AATATTTTTGACCACAAGCGCCAGACATATATTATGCGAGATTTTTGGCG
CGACTATCCCGTATACGCGAATATCCGCCACTTTCCTTCCCTGTTACCAC
CCCTTCCTCACGCTCCCAGCTTAATATGCCCATAAATAACCCACGCAGAA
GATATGATATTAATTAATCGCGCGTTATATCTACGACCGCCGTATTGACT
GACGAGGCACGGCGGACATGAGTGGAGGCAGCATGTATGTGACTTGATAT
ACCACGCCCAG
CAATCCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACTGAGGAAACCAA
ATGGCTGAGACACACCTAAAAAATGTTCAATAGCCTTAGTTATCAGGGAT
GTGTATTTTTAAATAAAGGCTTTCAACTATTTTTTGTCACATATAAGAAA
TTGCTTGATTCACAATCCAATAAATGTTTAAATTTCAAAGCCACAATACT
ATCTTTCTTTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCCATCTTTCTATCTATCTATGCTTTAATGTTTCATTAT
AATTTTTCATTTTCTACTGTTTTTTAAAATTCTGATGGGTGTTATTAAAA
TAACTATGACTAACATATTTTTGACTCTATATGCAAAAATACTACTGTAT
ATCAATGACATTAACAAATAAGCAAATCACTCAGTCAGCTGATGGTGCTC
CTTTGGCTGTGATCCAACAGAATTTATTTTAATGGTGTTAGAAACTATTT
TTATTTTATCCTTACAAAACCAGGGTCTTATCTGATAACTGAAGTTTCTT
TATTTATTCCCTATTGCACTTTTTGGGAGGGGATTTTTTATTTTATTAAT
TTTGTGTAACAACTCGCTCTCCCTCCCCTCCTCCACCCACTCGCCCTCCC
TCCTTTTTATTTCTCCCCTACCTAACTCCCTACCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_f10.g1 MSMg01no466_f10.g1 CHROMAT_FILE:
MSMg01no466_f10.g1 PHD_FILE: MSMg01no466_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:47 2005
         (482 letters)



>mm_chr18_41392271_41393152
          Length = 882

 Score =  710 bits (367), Expect = 0.0
 Identities = 411/433 (94%), Gaps = 12/433 (2%)
 Strand = Plus / Minus

                                                                       
Query: 62  agggatgtgtatttttaaataaaggctttcaactattttttgtcacatataagaaattgc 121
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 882 agggatgtgtatttttaaaaaaaggctttcaactattttttgtcacatataagaaactgc 823

                                                                       
Query: 122 ttgattcacaatccaataaatgtttaaatttcaaagccacaatactatctttctttctat 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 822 ttgattcacaatccaataaatgtttaaatttcaaagccacaatactatctttctatctat 763

                                                                       
Query: 182 ctatctatctatctatctatctatct------------atctatctatctatctatctat 229
           ||||||||||||||||||||||||||            |||| |||||||||||||||||
Sbjct: 762 ctatctatctatctatctatctatctatccatccatccatctttctatctatctatctat 703

                                                                       
Query: 230 ccatctttctatctatctatgctttaatgtttcattataatttttcattttctactgttt 289
           | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 702 ctatctatctatctatctatgctttaatgtttcattataatttttcattttctactattt 643

                                                                       
Query: 290 tttaaaattctgatgggtgttattaaaataactatgactaacatatttttgactctatat 349
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttaaaattctgatggttgttattaaaataactatgactaacatatttttgactctatat 583

                                                                       
Query: 350 gcaaaaatactactgtatatcaatgacattaacaaataagcaaatcactcagtcagctga 409
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 582 gcaaaaatactactgtatatcaataacattaacaaataaggaaatcactcagtcagctga 523

                                                                       
Query: 410 tggtgctcctttggctgtgatccaacagaatttattttaatggtgttagaaactattttt 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tggtgctcctttggctgtgatccaacagaatttattttaatggtgttagaaactattttt 463

                        
Query: 470 attttatccttac 482
           |||||||||||||
Sbjct: 462 attttatccttac 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 20
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)