BAC Information

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BAC

Clone NameMSMg01-466J07
Chromosome18 (Build37)
Map Location 3,828,331 - 3,828,482
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J07.T7 (MSMg01no466_j07.b1)MSMg01-466J07.TJ (MSMg01no466_j07.g1)
ACCAG550494AG550495
length1,753827
length of high quality
(start - end)
---153 (76 - 228)
definitionCHROMAT_FILE: MSMg01no466_j07.b1 PHD_FILE: MSMg01no466_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:07 2005CHROMAT_FILE: MSMg01no466_j07.g1 PHD_FILE: MSMg01no466_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAGAAGACGCGAATAAAATTCTCTGACCGCTCGTCGCGTGCCCCTGTAC
ANGCACCAGCAGGAAGAGAGATATTTAATTCACTACGCGNGTATAAAGTC
NACAGAGGAGATGTACAGGAATGCCGATCGTCTCTCNCTCTTGTTCTATG
ACANAGTNCTTTAGTNTANNNTCTTACCCCCTCGCTTGTTATCCACCATA
CGCACTCAGCGCAAGAAACACCCGACACCACGATGCAGAGACACAAGATG
TNTNCANAATTCCCACACCAGAGCGAGGATGATGAAATATCATACACAAA
TAATTGTAAATGTATGAATGTTATGTCGATCCAGAACACAGCTGTTCGAC
TTAGCTAACACCTTCACATATTCATAATCTATAGCCAACGTAGCACGAAG
GTATACATCGAATACGCCTAGATGACCGACATACAAATTAACACAACAAC
CGCTCCATCTCTACTCACTCTGCCTGTCACTATATACGCTACACAACCAG
TACTATAATTTCATGCGCCGTATGATAGGTAAGATGATCATACGTGTTAT
CAAGATAAGACGTCTCTCATTGTGCTGTTATTATTATATCATCTTCTTAT
CGAGCCGAGATATATATACATCGTGATTGATTATCATNCATAGACTACAC
AACACAAGTGAGAGAGTNTATATAATCTCTATGGTAGTCATCTTATTAAA
GATACATCAATATCACACACATATAGATACACGATATANCATCTCCATAT
ATATATGTATAGTGTTTCTCACTCCCCCGATACCTATTGTTAGTCGTACA
TACTACAGACCACTTAGATTCTTAAAATATAGATTAATGAATGCGGCCCA
CGGGACACTAGTTCTACACTTATTATAATTAACACTGACGCGCATATCAC
GATACTCTTGTGTTGGTTTATGTCTGTTCGCTTCACGTATATGTGCCACG
CTCCCCGCTAGCTGCGACAACATTTGATATTATGCGCGCCGATAGTCGCT
CCCCTATATCGCTACTCTGTGTGTATATCTCTCCTCTAGCACTCTGAGTC
AATGACGGAGCTATGTATATACTAACCGACATACGATAACACGAGGTCAT
ATTGATGTAGCTTGCTGCGACGATGGAACTANTCTTAGAGACGACGCGAC
TTCACTGCTCATCTGACTAAGTCAGCTATCATCNTCATCGCACTCTACTA
TCGCGTCGCACTCTAATATATAGCGCACGCTGNATGTGCAATATATACAG
CTGTCACTATCACATGCGACNTACACTATCTCTCGCTTACAATTATCAAT
ATTGCATACGCTGGATCGTGTCTGCTCAACTCACCAACTCTACCTATACG
CAACGATCGAACACTGTGTAGTGTTATCTACACTGGTTATACGAACGTCA
TACGGAGGTTAATGACGTGAGACTCGCTGTGTCTTAGTCTCGTATACAGN
GAGACTATATACTCCTCACTTTATACAACTGTCAGACGCGTGTCTTGTNT
GTGACATGATGTACNGACNTCTCATGTCTCTACTCNTACTTGCTATANTN
GACATGCAATGATGAGAGACAACCGACTCACACACTCAATGATAGACACT
ACGATAAGGNTAATCGTGCGTACTGACTAACCGCACAGCGCTCAGTCTTA
TGATGTCACTGACGCGNTACATATCACACACTCTGCACGACGAGACATCA
CGTACGAATTCATCGTATACTCANNACTCCTCNCTACGAATTTACGCGTG
AGN
CCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTCTAGAGGAATTCCAATGAGGCTGAAGAGCCAGGA
GGTAAGAAGTACTGTTGTTTGTCAGTTCTTTTCTCCTGTGTTGTAAGACA
CATAGTCTTTTGGAAGCCATTTAAATTTGTCCAGATGATTTCGGAACAAG
GCAAAAGAGTATTAGAGAGGGGTGTGGCAGGTATCTTTCCTCCCTTTTTT
TTCTGTTCGGTTCTCTTGCTCCCTCCGTGTGTTGTTCTTTTCGGCCAGAG
CCACCCGACTTTTTTTTGTTTTGCGGCCCGTATTTGTTCTTTATATTATG
GGGGTTTTTTTTTTTTTTCTCCGTAGTGTACTTGGGCACGGGTTTGCAGT
CATAGTAGAGTGTGGCGTGGTTGATTACCCCCCCTGTTGCATCTCGCATT
GCTCTTTTTTTCCTCTCGTATTTGAGACAGCCACATTATACTATTTTTTT
CGATTCCTTCACTTTATACCTCTCCTTTCCGCTTTTCGTTACTTCTCTGT
CCTACTCCTTATTTATATTCTTTTTTTTACTTTTCCTCCCCCTCATTTTT
CCTATCTCATTTTTAGTCTTGTCTACCCCGCATTATTCCGTCTCTTTTTT
TCATTTTCTTCCTCCCTCGTGTTGTCTTCGGTCCTTCATCTCTCTTCTCC
TCCCCATCTATTTTTATTTTTTTTTTCCCCCTCTCCTTCTCTATAATTTC
CATATCCATCTTCTCTCACTAACCTTACTCCTTCTCTTCAACCATTCTTA
TTCTCCTCCTTTCTTTTTTCTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j07.g1 MSMg01no466_j07.g1 CHROMAT_FILE:
MSMg01no466_j07.g1 PHD_FILE: MSMg01no466_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:07 2005
         (153 letters)



>mm_chr18_3828131_3828683
          Length = 553

 Score =  294 bits (152), Expect = 2e-84
 Identities = 152/152 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaatgaggctgaagagccaggaggtaagaagtactgttgtttgtcagttcttttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaatgaggctgaagagccaggaggtaagaagtactgttgtttgtcagttcttttctc 260

                                                                       
Query: 61  ctgtgttgtaagacacatagtcttttggaagccatttaaatttgtccagatgatttcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgttgtaagacacatagtcttttggaagccatttaaatttgtccagatgatttcgga 320

                                           
Query: 121 acaaggcaaaagagtattagagaggggtgtgg 152
           ||||||||||||||||||||||||||||||||
Sbjct: 321 acaaggcaaaagagtattagagaggggtgtgg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)