BAC Information

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BAC

Clone NameMSMg01-466M03
Chromosome18 (Build37)
Map Location 3,558,997 - 3,559,438
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M03.T7 (MSMg01no466_m03.b1)MSMg01-466M03.TJ (MSMg01no466_m03.g1)
ACCAG550629AG550630
length819765
length of high quality
(start - end)
208 (77 - 284)443 (77 - 519)
definitionCHROMAT_FILE: MSMg01no466_m03.b1 PHD_FILE: MSMg01no466_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:22 2005CHROMAT_FILE: MSMg01no466_m03.g1 PHD_FILE: MSMg01no466_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAAAGAGGATCCG
CGGAATTCTTTGGTTACTTACAAAGCCCCATTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGACCTCTTTATATATATTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGCC
CTTTTTGTATTATTAGCAGTGTCTTTTGCCTTACAGAAGCTTTGTAATTT
TATGAGGCCCCATTTGTCTATTCTCGATCTTACAGTACAAGCCATTGATA
TTCTATTCAAGAATTTTTTTTTTGTGCCCATATCTTCGAGGCTTTTCCCC
ACTTTCTCTTCTATACCTCCCAGTGTGTTTGGTTTTATGTGCAGTTCCGT
GCGTTTCTTTGTTTTGCCCCCCCCTACCTTTCTACAATCTACTTTCCAAC
CCCCATTTTTTTTTCCGTTTCTTTTCTCTTCTCCTTCTTTTCTCTTCTGT
TCCACCTCTTTGCCTCCCCTTCCCCTTTCATTTTCCCTCCTTCTTTCTTT
TTTCTCTCTCTTTCCTCTTCCTTTTTCCCTTTTTAATTTTCCCCCCCTTT
CTTTTTTTCCTTTCTCTCCCCTTTTTTTGCTTTTTTCCTATTTTTCATTT
TATTCAATCCTTTTCCTTCTTTTTCTTCTATTTCCCTCTACACACTTTTA
TTACTTCTTCCACCTCTTCTTATTTAATCCCCACCTTCCTACTCACTCTC
TCCCGCTTTCTTTTTTCCCTCACTCCCTCCTCACTCCTTTCTACCCTCTT
TTCCCCTTTTTGTTTTCTN
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACAGCAGAGGAAGTCAAA
GGGCTAAGGAGAATGGACAAGTCTTGTGTAGCTGTTGTCATGTCAATCAT
AAACATAAGATGTGATCTCTGAACAGGGCACAGGAAGGGTGATTGGACAG
TCATGGAGGAAAAAGTCAACATGATATTTTGTATACACAGAACAGTTGTT
TGTTATTTTTCTTGACACAGATGGAAATATTGGACACAAAGGATGGGCAC
AAATGTTAAAGGAGCTATTTTTAGAATATGCTAATGCCACCAAATAAGTC
TTCTTTCTGTAACCAGTGCCACCATTAGAAGGTCATGCTTAAGAGAGGAT
GTGCACCTCCATAAAAACTATGATCTTTAAGGATGTGGACTCCAGGTACT
ACGTTGAAGTACTTGCTGATAATGGCAAGTTTGAGTTTTATTTTATGTAA
CCAGGAAACTTGATCAAGTCTGTCATTTTACTGCCATTACAAGCTGAGCA
AGCTCATGAAGTGATCAGTGTTTTAATGAATAATTTTAAAATCCTCCACT
CCTTTAATTGGTTGGAATTTGAACCGCGACTCTACGCTTCCCCTATTTAT
TTTTTTCTCCCACTTCTCTTACTCTCGTCTATTCTTTGTTTAACTCTTTC
CCCTTATTTTATCCCGTTTGCCTAATATCAACCTTTATTATCCCCCCTCC
TTCCTACTTCCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m03.g1 MSMg01no466_m03.g1 CHROMAT_FILE:
MSMg01no466_m03.g1 PHD_FILE: MSMg01no466_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:22 2005
         (443 letters)



>mm_chr18_3558797_3559638
          Length = 842

 Score =  797 bits (412), Expect = 0.0
 Identities = 435/448 (97%), Gaps = 11/448 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcgaacagcagaggaagtcaaagggctaaggagaatggacaagtcttgtgtagctgtt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaaacagcagaggaagtcaaagggctaaggagaatggacaagtcttgtgtagctgtt 260

                                                                       
Query: 61  gtcatgtcaatcataaacataagatgtgatctctgaacagggcacaggaagggtgattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatgtcaatcataaacataagatgtgatctctgaacagggcacaggaagggtgattgg 320

                                                                       
Query: 121 acagtcatggaggaaaaagtcaacatgatattttgtatacacagaacagttgtttgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtcatggaggaaaaagtcaacatgatattttgtatacacagaacagttgtttgttat 380

                                                                       
Query: 181 ttttcttgacacagatggaaatattggacacaaaggatgggcacaaatgttaaaggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcttgacacagatggaaatattggacacaaaggatgggcacaaatgttaaaggagct 440

                                                                       
Query: 241 attttt-----agaatatgctaatgccaccaaataagtcttctttctgtaaccagtgcca 295
           |          |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 a-----caaagagaatatgctaatgccaccaaataagtcttctttctgtaaccagtgcca 495

                                                                       
Query: 296 ccattagaaggtcatgcttaagagaggatgtgcacctccataaaaactatgatctttaag 355
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 496 ccattagaaggtcatgcttaagagaggatgtgcacctccaaaaaaactatgatctttaag 555

                                                                       
Query: 356 gatgtggactccaggtactacgttgaagtacttgctgataatggcaagtttgagttttat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 556 gatgtggactccaggtactacgttgaagtacttgctgataatggcaagtttgagttt-at 614

                                       
Query: 416 tttatgtaaccaggaaacttgatcaagt 443
           ||||||||||||||||||||||||||||
Sbjct: 615 tttatgtaaccaggaaacttgatcaagt 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space:   360256
Effective search space used:   360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)