BAC Information

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BAC

Clone NameMSMg01-466O20
Chromosome18 (Build37)
Map Location 29,026,286 - 29,026,687
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466O20.T7 (MSMg01no466_o20.b1)MSMg01-466O20.TJ (MSMg01no466_o20.g1)
ACCAG550759AG550760
length833774
length of high quality
(start - end)
224 (74 - 297)402 (81 - 482)
definitionCHROMAT_FILE: MSMg01no466_o20.b1 PHD_FILE: MSMg01no466_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:37 2005CHROMAT_FILE: MSMg01no466_o20.g1 PHD_FILE: MSMg01no466_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAGAATC
CGCGGAATTCCACATATTCACATGTATTTTAGGAAAACACAACTCCCATT
TTCTATACCTCAACAATGCATATTCATGCAATACAAAATAGATCTAGTTA
TTCATTTATTATTTATTTATTCATTTATTGTTAAGAAAAAGGATACAGAA
AGTTTGAAGGGGGAGAAAAACCTGATGCAGAGCCACAGGGGAAGAATTGG
ACCATCTAAAGGACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
TACTAACCGCCAAAAAATTTTTTTTTTTTTTAGAACGTTTTTCTTTTTTT
ATATCTGTTTTTTTTTTTTTTCTCTCTCGTACTAGTTTTTGTAGCCCATT
TTTGCATCTATTCTTTGCTTTTCCACTCCTATCTATTTTTTTTCTATCTT
CTATATAATTTATCTATTTGCTTTTTCCTTTTTATTTTTTTTTGTTTTTC
CGCTCTCCTATCTTTCTCTTTTTCAATTTCTTTTACATTATTTTTTTTTT
ATCACTATCTAATCATTCGTCCATCTTATAGTTATTTTTTTCTTATCTCT
TTTAGCATTCTTTAACAACTCTTATTCAGTTCTCTTATTCCTCTGTAACC
CCTCTCTTACTGTTCTGTTTTTTTTTTATTGCCTGATATTACCCTTGTTT
TATGTATTACTCCGTCCCGATTCTTCCCTTTATTCTCCTGCCTACAAATT
ATCTAACGTACCATCGATCTCATATTCCCCATGTCTTCGCCTTTTTTTCC
AGTCAACTTCTCTCCCCCACCCCCTTTTCTTTG
NNCCCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTAAAGCATTAAACCAAA
GTTGCCCCATATTTTGACCATTGGACTGATTTCTTTTAACATAACCATAG
AATTTTAAAATATAATAATGTGATTATTATTCTACATCTTCTAGAAAGAC
AGAGTGAGTGAGAGTGAGGAGAGAGCTTGATTTATGCATTGTTTATGAGA
GCTTAATAACTGATATTCTTTGATTCAAACATAAAAGTTTTATTAATGTA
GCCTTTGTATTGGAATTGCAGTTTTAAATTCACATATTAAAGCTGCTTTT
TGACATAGGTCAATTAATGACAAAGCCAAATGTAACACTTTATTCCTAAT
CCCAACTAAAGTAATGACCTAGACACTAAATAAACCTCTGGTCTCTGACT
TTTGTAATGCAATAATGATGCAGAATTATGTGGTTCATGTGCAAGATTCA
AACCAAAATACACTCATGTACAAAAGCAAGCCAATATAAAACCCCGCATG
TTTCTCTCAGTTGTCAACTATCTAAAATTCAAGCATGTTTTTATTATTTT
TTTTCCCCTATCTACCATTATTTTCTATTTTATCTATAAGGGATCCTTTT
TCACTTTACAAATTATTTTGGTACTCTCCAAACTTTTTTTTTGGCCCGAA
AACTCTCTTACACCTCATTTATATGCTCTCTTTTTTTAGGGCTTTCTGCT
GGTTATACCCCCCGCATCCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_o20.g1 MSMg01no466_o20.g1 CHROMAT_FILE:
MSMg01no466_o20.g1 PHD_FILE: MSMg01no466_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:37 2005
         (402 letters)



>mm_chr18_29026086_29026887
          Length = 802

 Score =  777 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactaaagcattaaaccaaagttgccccatattttgaccattggactgatttcttttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cactaaagcattaaaccaaagttgccccatattttgaccattggactgatttcttttaac 543

                                                                       
Query: 61  ataaccatagaattttaaaatataataatgtgattattattctacatcttctagaaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ataaccatagaattttaaaatataataatgtgattattattctacatcttctagaaagac 483

                                                                       
Query: 121 agagtgagtgagagtgaggagagagcttgatttatgcattgtttatgagagcttaataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agagtgagtgagagtgaggagagagcttgatttatgcattgtttatgagagcttaataac 423

                                                                       
Query: 181 tgatattctttgattcaaacataaaagttttattaatgtagcctttgtattggaattgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgatattctttgattcaaacataaaagttttattaatgtagcctttgtattggaattgca 363

                                                                       
Query: 241 gttttaaattcacatattaaagctgctttttgacataggtcaattaatgacaaagccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gttttaaattcacatattaaagctgctttttgacataggtcaattaatgacaaagccaaa 303

                                                                       
Query: 301 tgtaacactttattcctaatcccaactaaagtaatgacctagacactaaataaacctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgtaacactttattcctaatcccaactaaagtaatgacctagacactaaataaacctctg 243

                                                     
Query: 361 gtctctgacttttgtaatgcaataatgatgcagaattatgtg 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtctctgacttttgtaatgcaataatgatgcagaattatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)