BAC Information

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BAC

Clone NameMSMg01-467G14
Chromosome18 (Build37)
Map Location 6,520,773 - 6,521,298
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1
Downstream geneLOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467G14.T7 (MSMg01no467_g14.b1)MSMg01-467G14.TJ (MSMg01no467_g14.g1)
ACCAG551127AG551128
length719720
length of high quality
(start - end)
526 (76 - 601)49 (431 - 479)
definitionCHROMAT_FILE: MSMg01no467_g14.b1 PHD_FILE: MSMg01no467_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:16 2005CHROMAT_FILE: MSMg01no467_g14.g1 PHD_FILE: MSMg01no467_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGGTTTTCCTTGCTTTTAAGATATTTCTGTATCTTATAGGGTTTGC
CATTGCTCCTTGTGGATTGAGGCTTCATGAGTAGGTTGCTCAATAAGACA
CTGCCCCCCACACACACACAGTGGCAATGACTCTTTAAGAAATGGTGCTT
GCAGCTTCCTTTACAAATTAAACTTTTACCTAATCTGTAACTAATAATGT
TCTTTGAGATCATTTATAACTATTATCTCATTATGCTCACATACTGCATA
CTTAATCTGTTTATATTTAACTGACCTTATACCTGAAATGGTGGGGCACA
CTTTTAATCCCAGCACCCAGAAGGCAAAAGCAAGAGGATCTATTTGAGTT
GTAAGGCCAGCCTAGTTCACATAGCAAGTTTCATGATAGCTAAGTCTAAA
TAGAAAGACCCTGTCTCAAAAAACCAAAAATAAAAAAACTGACATTAAGA
AAAACAATATAATTACTATAATAATATAACAATATAATTAATCTTACTAT
GCATTGGACTTCCCATGTTTCTTTTTTCTCTTTCATAAGCCATCACGACC
CTGACTCAGATCAGTGAGTGTGTCATAAGATACTGGCCATTACTAAGATC
ATCTGCTGACCGNCATCAGGCACTGTAAGTCACAGTCCCCACAGAGAATA
CTGACAACAATCTGTGTTC
GACAGGGGAGGCCCGGNGGNGGCCGTTTTTCCTCACTGCNNGAANNANAG
AAGTTTTCGGCACCCGCCACCGGAGGAAACCGAAGGGCGGAGAACACCGG
AAAAAAGGCCCCCANCCNNAANCANCAGGGAAAGGCAAANCAAAACAACC
CGGAGAAGCCAGCGCACACCAANCAGAAGGGCGAAGAACAAAAANNCAGG
GGACAGCAGAAGCNGACGAGGANGNGGAGAAAGAGGTTTTCTCCNCCANN
GNNGGNGGGANGGCAAGCNGGNACAACCACNCGGGAAANCANNCGGGCAG
TTTTTCGTATTTTTGGACANAGNGCNGCCGGAAAANCCAGCAAAATTTTT
CCCCCCCCCCCCCCCGATTTTCCAACTGGNAANAAGGACACATGCTCCAC
TATGCTTATAGTAGACTAAGAATTTTAAAGAGCCAGAAGCTGAAAGATCC
CAGATGTCCCTCAACAGAGGAATGGATACAGGAAAGGTGGCACATTCACA
CAAAGGATGAGATGGCTTGTACATTCCTGGACCAGGGAGTGGCACCACCC
GGAGGTGCGGCCCTGATGGAAAAGGCGAGAAACCATGGGGGAGGCCACAA
GACCCCCCCCCCAGCCGCCCAGGATTTTTTTTTTTTTTTTTGAAGACGCA
GCAAGAAACACAAAGAAGCCAAAAGCTCCAGGCCGAGCAAAGGCACACAC
GAACCGCCGCCCTGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_g14.b1 MSMg01no467_g14.b1 CHROMAT_FILE:
MSMg01no467_g14.b1 PHD_FILE: MSMg01no467_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:16 2005
         (526 letters)



>mm_chr18_6520573_6521502
          Length = 930

 Score =  924 bits (478), Expect = 0.0
 Identities = 514/530 (96%), Gaps = 8/530 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttctgtatcttatagggtttgccattgctccttgtggattgaggcttcatgagtagg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tatttctgtatcttatagggtttgccattgctccttggggattgaggcttcatgagtagg 260

                                                                       
Query: 61  ttgctcaataagacactgccc----cccacacacacacagtggcaatgactctttaagaa 116
           ||||||||||||||||| |||    ||| |||||||||||||||||||||||||||||||
Sbjct: 261 ttgctcaataagacactccccccctcccccacacacacagtggcaatgactctttaagaa 320

                                                                       
Query: 117 atggtgcttgcagcttcctttacaaattaaacttttacctaatctgtaactaataatgtt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtgcttgcagcttcctttacaaattaaacttttacctaatctgtaactaataatgtt 380

                                                                       
Query: 177 ctttgagatcatttataactattatctcattatgctcacatactgcatacttaatctgtt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ctttgagatcatttataactattatctcattatgctcacatactgcatacttagtctgtt 440

                                                                       
Query: 237 tatatttaactgaccttatacctgaaatggtggggcacacttttaatcccagcacccaga 296
            | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagttaactgaccttatacctgaaatggtggggcacacttttaatcccagcacccaga 500

                                                                       
Query: 297 aggcaaaagcaagaggatctatttgagttgtaaggccagcctagttcacatagcaagttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaaaagcaagaggatctatttgagttgtaaggccagcctagttcacatagcaagttt 560

                                                                       
Query: 357 catgatagctaagtctaaatagaaagaccctgtctcaaaaaaccaaaaataaaaaaactg 416
           |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 561 catgatagctaagtctaaatagaaagaccct----caaaaaaccaaaaataaaaaaactg 616

                                                                       
Query: 417 acattaagaaaaacaatataattactataataatataacaatataattaatcttactatg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acattaagaaaaacaatataattactataataatataacaatataattaatcttactatg 676

                                                             
Query: 477 cattggacttcccatgtttcttttttctctttcataagccatcacgaccc 526
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aattggacttcccatgtttcttttttctctttcataagccatcacgaccc 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 930
Length adjustment: 10
Effective length of query: 516
Effective length of database: 920
Effective search space:   474720
Effective search space used:   474720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)