BAC Information

Click to search

BAC

Clone NameMSMg01-467L13
Chromosome18 (Build37)
Map Location 36,295,251 - 36,295,845
singlet/doubletsinglet
Overlap geneLOC100042150
Upstream geneCtnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2
Downstream geneLOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L13.T7 (MSMg01no467_l13.b1)MSMg01-467L13.TJ (MSMg01no467_l13.g1)
ACCAG551362AG551363
length714820
length of high quality
(start - end)		590 (68 - 657)33 (69 - 101)
definitionCHROMAT_FILE: MSMg01no467_l13.b1 PHD_FILE: MSMg01no467_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:40 2005CHROMAT_FILE: MSMg01no467_l13.g1 PHD_FILE: MSMg01no467_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTCGTGTCACTATACGACTCCTATATGCAGAGCATCCGCGGAATTCA
GAATCCTTCCGAGATGCCAATGAAGCCTGCTCCTCAAACTTCCCCACAGC
TCGGCTGCTTCCAAAGCCCTTCGCTCCACAGTCAGGACTAACTCCTCTGC
ATGGGACTGAAGGCAGGCTCCAGTGTGTCTGCCTTCCCTCTGTGCCCTGG
TCCAGCCACACACCGAGTTCCCATCTACTAAAGGTAGATGCTGTCTTCCA
CTCCTGCCCGTTTCCTAGGATACATCTGAGCCTCCAGGGGCTCGGGGCCC
AGTTCACTGTCTGCTGCATTCACTCAGCCTACACCAACCTCTGTCTTTTC
TTAGTTCCCCAGCAGCCTGGCCTGTACCACACCACCCAGCGTTCCTGGAG
CAGCTCGTGCTGTACACTGGGCACATTATTAAGTCTCGTCAACCAGATCG
TGAATGCTTAGACAGCCACAGAGGTACCAGGAAGTCCCGTATTGTGAATT
CTCAGTGCTTGGAGAACTGGGACCAGATTGGAGTCCTTTCTGTTCTGGCT
CAGGGAGAGATCATAAAATGTCAGTAATTCTTTATTTCTTTCCAAGTAAT
TACTGCTTTACAACTTCCAGGTAGTATTACATTATACTTCCACTTCCACC
CCTCCATGTGCTTTGTGGTTCCTTGGTCCAGTGTGCATATGCTAGGCTCT
GAAGACCAGACATN

TGCTGTGTTTGGCCTGGCGCCGCCTGGCTCTGACCTCAGGTGACCTATAG
ATGGTTCCCAGGAANTCGAGGCCCGCCTGGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGACCCAGAGCGAGGGAGGCAGTTCCCTCCCCCTCTCTTT
TTCTTTTTTTTTCCCCCCCTTTCCTCCCCCCTCTCCCCCCTCTTCCTTCC
TCCTTTTTTGCCCCCCCCCCCCTCCTCTCCCTTTCCCCCTTCTTCCCCCT
CTTCCCCCCTCTCGCCTCCTCTTCCCCTCCCCCCGTCCCCCCGCCCCCCC
CGCGGTTTTTCTTTCCCCGCCCGCCCCGGGCCCCCCCCTCCCCCCCTCCC
CCCCCCTTTCTTTTTTTTTCTTCCTCTTCCCCTCCCCCCCCGCCCCCCCC
CCCCCCCCCTCCCCCTCCCCCCCCCTCCCCCCTTTTTCCTTTCCCCTCCC
TTTCCCTTCCCCTCCCCTTCTCCCCTCTCCCCCTCTTCCCTTCCCCTCCT
CTCCTCTTTCTCCCTTCCTTTCTTCTCTCCCTCCCTTTTTTCTCCCTCTT
CTTCCCTCTTTTCCCTTTCTCTCTTTCTTCCTTTTTCCCCCTCCTCTCTC
TCCCCTCCTCCCTTCCCCCTTTCTCCCTTTTTCTTTCTCTTCTTCCTCCC
CCCCCCCTCCTCTCCCCCTTCTTTTTTCTCTTTCCCTCCTCCCCCTCTCT
CCTCCTCCCTTTTTCCTTCTTTTTCTTCCCTTCTTCTCTCCCTTCCTTCT
TTGCTTTCTCCTACTCTTCCTCCTCTTTTTCTCTCCTCTCTTTTTCCTTT
CTCTTCTTTCTCTCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l13.b1 MSMg01no467_l13.b1 CHROMAT_FILE:
MSMg01no467_l13.b1 PHD_FILE: MSMg01no467_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:40 2005
         (590 letters)



>mm_chr18_36295051_36296045
          Length = 995

 Score = 1123 bits (581), Expect = 0.0
 Identities = 590/595 (99%), Gaps = 5/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgaagcctgctcctcaaacttccccacagctcggctgcttccaaagcccttcgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgaagcctgctcctcaaacttccccacagctcggctgcttccaaagcccttcgctcc 260

                                                                       
Query: 61  acagtcaggactaact----cctctgcatgggactgaaggcaggctccagtgtgtctgcc 116
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtcaggactaactaactcctctgcatgggactgaaggcaggctccagtgtgtctgcc 320

                                                                       
Query: 117 ttccctctgtgccctggtccagccacacaccgagttcccatctactaaaggtagatgctg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctctgtgccctggtccagccacacaccgagttcccatctactaaaggtagatgctg 380

                                                                       
Query: 177 tcttccactcctgcccgtttcctaggatacatctgagcctccaggggctcggggcccagt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttccactcctgcccgtttcctaggatacatctgagcctccaggggctcggggcccagt 440

                                                                       
Query: 237 tcactgtctgctgcattcactcagcctacaccaacctctgtcttttcttagttccccagc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactgtctgctgcattcactcagcctacaccaacctctgtcttttcttagttccccagc 500

                                                                       
Query: 297 agcctggcctgtaccacaccacccagcgttcctggagcagctcgtgctgtacactgggca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctggcctgtaccacaccacccagcgttcctggagcagctcgtgctgtacactgggca 560

                                                                       
Query: 357 cattattaagtctcgtcaaccagatcgtgaatgcttagacagccacagaggtaccaggaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattattaagtctcgtcaaccagatcgtgaatgcttagacagccacagaggtaccaggaa 620

                                                                       
Query: 417 gtcccgtattgtgaattctcagtgcttggagaactgggaccagattggagtcctttctgt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcccgtattgtgaattctcagtgcttggagaactgggaccagattggagtcctttctgt 680

                                                                       
Query: 477 tctggctcag-ggagagatcataaaatgtcagtaattctttatttctttccaagtaatta 535
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctggctcagaggagagatcataaaatgtcagtaattctttatttctttccaagtaatta 740

                                                                  
Query: 536 ctgctttacaacttccaggtagtattacattatacttccacttccacccctccat 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgctttacaacttccaggtagtattacattatacttccacttccacccctccat 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 995
Length adjustment: 10
Effective length of query: 580
Effective length of database: 985
Effective search space:   571300
Effective search space used:   571300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |