BAC Information

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BAC

Clone NameMSMg01-467M05
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,900
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467M05.T7 (MSMg01no467_m05.b1)MSMg01-467M05.TJ (MSMg01no467_m05.g1)
ACCAG551394AG551395
length791816
length of high quality
(start - end)
232 (70 - 301)206 (74 - 279)
definitionCHROMAT_FILE: MSMg01no467_m05.b1 PHD_FILE: MSMg01no467_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:43 2005CHROMAT_FILE: MSMg01no467_m05.g1 PHD_FILE: MSMg01no467_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGACACCGCGGAATT
CTCTGATCTACTGACATTTCAGGTCCACATTTGCTCTGGCTCTGGCAACT
GACTGAACCATACAATTACGCTCATACCTAGAACTTTGGAAATGGTAATG
GAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGTAC
ACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAAGCC
AATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTTTTC
TTTTTTTTTTATAGTATTGTTCCNCTGAATAGCCCTGGCTGTCCTGGCAC
TTTGTTTTTTATAACAGACTTTGTGTGTGTGTGTGTGAGAGAGCGTGATT
GTATTACTTTCTCCTGCCCATTTCGAATTTTGTATTCTTCCGTCTTTACT
TTTTGATCTCCTGTTTTCTCTCTCTTTTCTTTTCATTTCCCTATTTTACC
TTCTCTTTTCACTTCATTTTCATCCCTCTCCACCTTCTCTCTTTTTTTTA
CATTCCTTTCTCTTTCCTCTTCTCCTCTTTATTCTTTCTTCTCTCTTACA
TTCTCTCCCACTTTCTCCATCTTACTCTCATTTCTTATACCTTCTTCCTT
TTTTCTTCCACCCTCTTTCTTTTTATTTTTCTCCTTTTCCGCGTTATTCC
CTCCTCTTTTTCTCCTAATCTCCTAATATTTCCCTCTCTTTCTTCTTTTA
TTATTTCTCATTCCGATTTTCGCCCTTTTTTTCTCGTTTTT
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGACTTCA
GGCAGAAAACTAGCCAGTCACGCCTCTGGATAGACAAGGCTCAACAGTTC
AGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACATGC
AGATCCCTGCCCCCCACCCCACCCCTCCCTCAGCCCCACCCAAACATAGG
GAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGCGAGATAACTTAGATT
CCTCGCCAGATATTTTTCTCTTTTACCTCGTTTCCTTCCTTATTCTTTCC
GTGTCTTTTTTGTTCCTCCCCATCTGCTCTCCTTACTATTTCACCTCTCA
ATGTTCTTTCCTTGCTTATCCCTCCCCCCTGCCGCCGCTACCACCCCTCC
CTATTCCCCCCTTTTTTTCCTCCCCTTCTTTTTTATTTCTTTTCCGTCTT
CCCCTAACTCTCCCTGCATACTCTTTTCCCACCTAATCCCTCCTTTCTCC
CTTTTCCCTTTCCTCTTTCTTCTTTTTTCTCCCCCAACCTCTTTTTCATC
TCTCTTCCCTCTCCTCCCCCTTTCTACCCTCGTTATCCCCTCATTCTTTC
GTTTTCTTCTTCCCTTTCCATTTTTTTCTATGTTAACCCCCTTCTGTCTA
CCTCTTATATATTCATCTTTTCTTCGTCTCTTCCTCGCTCCCTATTTTAC
ACACCACCATCTTATCCACCTCCCTATTTTCCCCTTTCATTATTCCCTAT
ACACCATTTCCGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_m05.b1 MSMg01no467_m05.b1 CHROMAT_FILE:
MSMg01no467_m05.b1 PHD_FILE: MSMg01no467_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:43 2005
         (232 letters)



>mm_chr18_40467476_40468106
          Length = 631

 Score =  313 bits (162), Expect = 4e-90
 Identities = 210/226 (92%), Gaps = 1/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtccacatttgctctggctctggcaactgactgaaccatacaattacgctcatacct 60
           ||||||||| ||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct: 425 caggtccacctttgctctggctctggcaactgactgaaccaaacaa-taggctcatacct 367

                                                                       
Query: 61  agaactttggaaatggtaatggagttgataacacaccctaacagaaagaggaatgctcca 120
           ||| ||| | |||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct: 366 agatcttcgaaaatggtaatggagttgaaaacacactctaacagaaagaggaaggctcca 307

                                                                       
Query: 121 ctcactagtacactttcactagaagcctcaccctgtcagcagtttaggaatttgtaaagc 180
           |||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 306 ctcactagaagactttcactagaagcctcgccctgccagcagtttaggaatttgtaaagc 247

                                                         
Query: 181 caatctggacaatatttaaatggtttggaatttctacttcatgttt 226
           |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 246 caatctggacaatatttacatgatttggaatttctacttcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 631
Length adjustment: 9
Effective length of query: 223
Effective length of database: 622
Effective search space:   138706
Effective search space used:   138706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)