BAC Information

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BAC

Clone NameMSMg01-468K18
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,905
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468K18.T7 (MSMg01no468_k18.b1)MSMg01-468K18.TJ (MSMg01no468_k18.g1)
ACCAG552089AG552090
length768778
length of high quality
(start - end)
344 (73 - 416)373 (78 - 450)
definitionCHROMAT_FILE: MSMg01no468_k18.b1 PHD_FILE: MSMg01no468_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:59 2005CHROMAT_FILE: MSMg01no468_k18.g1 PHD_FILE: MSMg01no468_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGAACTCTCCGTCCTTTCAGGTCCACATTTGCTCTGGCTC
TGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAA
TGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTC
ACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTT
GTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATG
TTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG
TCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGNNNNNTNNNNTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTTTTGTTTTTTNTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTGTCTTTTT
TTTTTGTGTGGTGTTTGTTTTCTTGGTTTTTTTTTTTTTTCTTTCTTTTT
TTTTTTTNCTCTTTCTCTCCCTTCTTCTTTTGTTTCTTTTCCTGTGTTTC
GCCTTTCCTCGTCTTTTN
TTACTATGCTTTGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAAAAACGTGAAAAATGAGA
AATGCCCACTGAAGGACCTGGAATATGGCAAGAAAACTGAAAATCGACGA
AAATGAGAAATACAAAATTTAAGAAGTGAAATATGGCGAGGAAAACTGAA
AAAGGTGGAAAATTTAGAAATGTCCACTGGTGACGTGGAATATGGCAAGA
AAACTGAAAATCATGGAAAATGAGAAACATCCACTTGACGACTTGAAAAA
TGACGAAAACACTGAAAAACGTGAAAAAAGAGAAATACACACTGTAGGAC
CTGGAATATGGCGAGAAAACAGAAAATCACGGAAAATGAGAAATACACAC
TTTAGGACGTAAAATATTGCGAGGAAAAATGAAAAAGGTGGAAATTATAG
AAATGTCCACTGTAGGACGTGGAATACGGCAATAAAACTGAAAATTATGG
AAAATGAGAAACATCCACTTGACGACTTGAAAAATGACGAAATTTAAGAA
AAACGTGAAAAATGAGAAATGCCCCCTGTAGGACCCCCAATATGGCGAGA
AAACTGATTATTATGGAGAAAGAAGAAACACCCCTTATTAAATGAAAATT
GCTAACCAAACCTGAAAAGGGGGGGAATTTAAAAAAGTCCCCCGCCCGAA
CGGGAAAAATTTCTTTTAAACAAAAAAATTTTGTTTAGTAATAAAAACTC
ATTCCGGCCTCTCCAAATAAAAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_k18.b1 MSMg01no468_k18.b1 CHROMAT_FILE:
MSMg01no468_k18.b1 PHD_FILE: MSMg01no468_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:59 2005
         (344 letters)



>mm_chr18_40467476_40468218
          Length = 743

 Score =  339 bits (175), Expect = 2e-97
 Identities = 217/231 (93%), Gaps = 1/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttcaggtccacatttgctctggctctggcaactgactgaaccaaacaattaggctca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 cctttcaggtccacctttgctctggctctggcaactgactgaaccaaacaa-taggctca 372

                                                                       
Query: 61  tacctagaactttggaaatggtaatggagttgataacacaccctaacagaaagaggaatg 120
           |||||||| ||| | |||||||||||||||||| ||||||| |||||||||||||||| |
Sbjct: 371 tacctagatcttcgaaaatggtaatggagttgaaaacacactctaacagaaagaggaagg 312

                                                                       
Query: 121 ctccactcactagtacactttcactagaagcctcaccctgtcagcagtttaggaatttgt 180
           ||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 311 ctccactcactagaagactttcactagaagcctcgccctgccagcagtttaggaatttgt 252

                                                              
Query: 181 aaagccaatctggacaatatttaaatggtttggaatttctacttcatgttt 231
           ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 251 aaagccaatctggacaatatttacatgatttggaatttctacttcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)