BAC Information

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BAC

Clone NameMSMg01-470D09
Chromosome18 (Build37)
Map Location 50,906,193 - 50,906,612
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
Downstream geneLOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470D09.T7 (MSMg01no470_d09.b1)MSMg01-470D09.TJ (MSMg01no470_d09.g1)
ACCAG553266AG553267
length746749
length of high quality
(start - end)
---428 (77 - 504)
definitionCHROMAT_FILE: MSMg01no470_d09.b1 PHD_FILE: MSMg01no470_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:02 2005CHROMAT_FILE: MSMg01no470_d09.g1 PHD_FILE: MSMg01no470_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTAGTCCTACATGTCCCNNANANGANNCACNANNATGCACACACAGC
CGCGGAATTCTCACACATTACCCCAAACCATTTTTCTGCCCAACATATAT
TTGTCAAGTGTGTTCTCCAAATCCCCTTCTTTCACATGACTTAGATTAGT
TTTTAAATAAATTAACAAATGGGTAGGATAGTATATATTGCACACTATTT
CGAGACAAATGCTTTGGAGAAAAAGAATTCGATTATTACAGTGTTTTAAA
ATATGGTAATTATCACACTGACTTGAGTTTTCTAGGCTTATGTGGAAGTC
CCATTAGATGTGCTGTGCAGCAATTTATTCCTACCAACTTATATCCCTGC
CTAGCTTTGTTCACCGCTTAAAAATATTGCCACATAAAATTCACTTTGAA
CAAAGCTACTCCCATAGATTAAAGTGAACTCAGCTCACCTTTTGTGTTCT
AACATATTTCCGCTTTCTCACAAGATACATGGTGTTTGTAGAGGTATCTG
CCCGCGAAACATATTCTGCATTTTATATTTCCGCTCCATTGCCCCAGGCC
ATAAAGATAGGTACATTGATCCTGCCGCCCACATGCCACTAGCTCTCTTC
AAATGACCGCCGACTGCCCTTCCCAAAGATACCACCGGCCCGCATGCATT
TGCCCACACCCCATTGCCTTGTCATCACACGCTTCAAACAACCCCTGCCC
TTCCCCCGATACTCCCCCCTTACCCCCCTCCCCTCACCCCTTGTCN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTATGATGAACTCATAACAT
CACTGGGAGCTAAAATAAGATCTTTCTACTAGACACTGCTTTTTGTCAGA
GTGTTTTACCTCAGCAACAGGAAATGAAATGAGGACATATGCCATAGTCA
CTTAGCCTCTGACTGCTGGTTCCTTCTTCCCAAAATAATTTCATCAATGA
TAAATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAGACAAATTTCGATGTT
GAAATGTCACATAAAGCAATTTATGACTTGAAATTCCCAAACCCAATGGA
GGCTTGACTCTTATTGGATTATTGATATTCATGGAATGCACTTTAATCTC
CTGCATTAGGAACTCCTTTTTGACATGGCCATATTGATGCAAAATGGGTA
CTTCTTGAAATAGAAATAATGTCAAGAGCTCGAAATACCATGGGGATAAT
TAATCTGAATCATAAAGAGGATAGAAGGAGGAAATTTGTATCATTTGTAA
GTATGCACTTCACTTACAGCTAAATTGAATACCCCTGAGGAAAATTCCCG
AGAGAATGCCAAGCCAAGTCTATCTGTGTCCATAATAAACCCTGACTCTA
CATCTATGCTTCTGTATGTCATAACCACCTCGCCTCATAGTTCTCTAGGT
AATGCTGCACTGCTACACGCACTTATTTTCCAGCTTTTAAGTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_d09.g1 MSMg01no470_d09.g1 CHROMAT_FILE:
MSMg01no470_d09.g1 PHD_FILE: MSMg01no470_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:02 2005
         (428 letters)



>mm_chr18_50905785_50906612
          Length = 828

 Score =  785 bits (406), Expect = 0.0
 Identities = 418/424 (98%), Gaps = 4/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ctatgatgaactcataacatcactgggagctaaaataagatctttctactagacactgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 828 ctatgatgaactcataacatcactgggagctaaaataagatctttctactagacacttct 769

                                                                       
Query: 65  ttttgtcagagtgttttacctcagcaacaggaaatgaaatgaggacatatgccatagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttttgtcagagtgttttacctcagcaacaggaaatgaaatgaggacatatgccatagtca 709

                                                                       
Query: 125 cttagcctctgactgctggttccttcttcccaaaataatttcatcaatgataaatggtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 708 cttagcctctgactgctggttccttcttcccaaaataatttcatcaatgataaatggt-- 651

                                                                       
Query: 185 aaaaaaaaaaaaaaaaaaaaaaaagacaaatttcgatgttgaaatgtcacataaagcaat 244
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 --aaaaaaaaaaaaaaaaaaaaaagacaaatttcgatgttgaaatgtcacataaagcaat 593

                                                                       
Query: 245 ttatgacttgaaattcccaaacccaatggaggcttgactcttattggattattgatattc 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaggacttgaaattcccaaacccaatggaggcttgactcttattggattattgatattc 533

                                                                       
Query: 305 atggaatgcactttaatctcctgcattaggaactcctttttgacatggccatattgatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atggaatgcactttaatctcctgcattaggaactcctttttgacatggccatattgatgc 473

                                                                       
Query: 365 aaaatgggtacttcttgaaatagaaataatgtcaagagctcgaaataccatggggataat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaatgggtacttcttgaaatagaaataatgtcaagagctcgaaataccatggggataat 413

               
Query: 425 taat 428
           ||||
Sbjct: 412 taat 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)