Query= MSMg01no471_i05.b1 MSMg01no471_i05.b1 CHROMAT_FILE:
MSMg01no471_i05.b1 PHD_FILE: MSMg01no471_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:47 2005
(627 letters)
>mm_chr18_26687456_26688482
Length = 1027
Score = 1064 bits (550), Expect = 0.0
Identities = 592/608 (97%), Gaps = 6/608 (0%)
Strand = Plus / Plus
Query: 21 aaaacaaatattcacacatcctcattagaaccacatcaatattcttagcagattttctca 80
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaaacaaatattcacaaatcctcattagaaccacatcaatattcttagcagattttctca 280
Query: 81 aagaaatatttttaaatttggtaaaacccaaattgtatatatatatatattttgcttatt 140
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 281 aagaaatatttttaaatttggtaaaatccaaattgtatatatatat----tttgcttatt 336
Query: 141 gaaaataaaatttcctcctcaaataatatatccttattcaagttttccctccctccattt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaaaataaaatttcctcctcaaataatatatccttattcaagttttccctccctccattt 396
Query: 201 cctcgagttcctcccaactgactttcccatatggatccatctagttcttgcattagaaaa 260
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 397 cctcgagttcctcccaactgactttcccatatggatccacctagttcttgcattagaaaa 456
Query: 261 taagcagccttttaatggatagtaataaaatataataagataaaacaaaatctaatactt 320
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taagcagccttttaagggatagtaataaaatataataagataaaacaaaatctaatactt 516
Query: 321 ttgaatagcacaaaacacacagaaaggaagtagccaaagaaaaggcacatgagcaaacac 380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttgagtagcacaaaacacacagaaaggaagtagccaaagaaaaggcacatgagcaaacac 576
Query: 381 agacacagagatccacttgttctcccactcaggaatcctataacaacattaaattggaag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 577 agacacagagatccacttgttctcccactcaggaatcctataacaacattaaactggaag 636
Query: 441 ccataatatgtttgccacaggcctgtagggtaaagagaaaaaatatgtgaataaattaca 500
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccataatatgtttgccataggcctgtagggtaaagagaaaaaatatgtgaataaattaca 696
Query: 501 aaataaaaaaatataaaattaaaaacagaagaagaaaaacttgccatgtcgtatgagact 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 697 aaataaaaaaatataaaattaaaaacagaagaagaaaaacttgccatgccgtatgagact 756
Query: 561 aggaaccattaaagatgctggagagttcattct-ttagatcatttactactggcttgcag 619
||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||
Sbjct: 757 aggaaccattaaagatgctggagagttcattctatt-gatcatttattactggctttcag 815
Query: 620 cctatcca 627
||||||||
Sbjct: 816 cctatcca 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_i05.g1 MSMg01no471_i05.g1 CHROMAT_FILE:
MSMg01no471_i05.g1 PHD_FILE: MSMg01no471_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:47 2005
(551 letters)
>mm_chr18_26897402_26898352
Length = 951
Score = 1027 bits (531), Expect = 0.0
Identities = 546/551 (99%)
Strand = Plus / Minus
Query: 1 tgtgagaactagagtcttttgttatggagagaatatcatctgaattggagctcagtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tgtgagaactagagtcttttgttatggagagaatatcatctgaattggagctcagtggct 692
Query: 61 atcttgaacacatgagatggtctgtctatacagacagtccttgttcttgtcactctggct 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 atcttgaacacataagatggtctgtctatacagacagtccttgttcttgtcactctggct 632
Query: 121 tctgctctgaggagtagggctttacgaatcaccaggagactgctcctaaaggcagatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tctgctctgaggagtagggctttacgaatcaccaggagactgctcctaaaggcagatgac 572
Query: 181 acagaacagcaagcatgttaccatgtacatcatctctctgcagggtatgtgggaacagca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 571 acagaacagcaagcatgttaccatgtacatcatctctctgcagggtatgtgggagcagca 512
Query: 241 cagagctggtgctgcttggctctccccaggggaactcattctattcttcacaatatcttg 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 511 cagagctggtgctgcttggctctccccgggggaactcattctattcttcacaatatcttg 452
Query: 301 ccactcatttgtaggcagagaacattgttaaaactgaatgctgaagtttggggaaaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccactcatttgtaggcagagaacattgttaaaactgaatgctgaagtttggggaaaatgt 392
Query: 361 cagcctaattgttgacatactcagctatctcatgggttagaatctgaaatcagaagcctc 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 391 cagcctaattgttgacatactcagctatctcatgggttggaatctgaaatcagaagcctc 332
Query: 421 agagcacacacctccttgtgggtgagatgctggatgaagggaatgttaggagaaaggggt 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 331 agagcacacacctccttgtgggtgagatgctggatgaaaggaatgttaggagaaaggggt 272
Query: 481 gagcattgtgaataggaaggaggtactggggagcgatatttcttataatctaattgctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gagcattgtgaataggaaggaggtactggggagcgatatttcttataatctaattgctct 212
Query: 541 gttttatagaa 551
|||||||||||
Sbjct: 211 gttttatagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
