BAC Information

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BAC

Clone NameMSMg01-472C11
Chromosome18 (Build37)
Map Location 72,863,546 - 72,863,788
singlet/doubletsinglet
Overlap genenone
Upstream geneDcc, LOC629684
Downstream geneLOC100043411, LOC100042955, Rkhd2, Smad4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472C11.T7 (MSMg01no472_c11.b1)MSMg01-472C11.TJ (MSMg01no472_c11.g1)
ACCAG554754AG554755
length734781
length of high quality
(start - end)
539 (71 - 609)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no472_c11.b1 PHD_FILE: MSMg01no472_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:41 2005CHROMAT_FILE: MSMg01no472_c11.g1 PHD_FILE: MSMg01no472_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGATTTCCAGAGCTACACAGAGAAACCCTGCCTCAAAAAAA
AAATCAAGAGAGAGAGAGAGAGAGAGAAGAAAAGAAAAGAAAAGAAAAGA
AAAGAAAAGAAAAGAGAAAAGAGAAAAGATATGTTGTATGACAACACTTT
CCCTGGGAAGATGTAACTCACATACAAACATCTATTCATCCCAGCTAGGG
AGCTCACAACACAACAAAGGATGGATGCCACCAAAATCCAAAGTCCAACT
TGGTGAACCAGTGAGTTTTATTAGGTTTACTTAACAGTGTATGGTTGAGG
AGTTACTTAGGAGCAGAAATGACTCAAAGATAGCTGTGTCACCTAAGCTT
ATCCCGTCATGGGTGACAAAAGTTAAAAAATCTAGAACTTACCACACAGA
TGGCTCAAGAGATTAGAGAATTGCTCAGTTGGTCTACACCTCTTCTAGGA
AGCTCAACTGTTCTTTGCTTCTTTGCAGATTTTCTGTCTTGTCTGAGTAT
GACTCAGCCTCTCAGCCATCTTATTGTTTATTCTTGGGAGGGAGAGGCCT
ATTGAGTCTAGTAAGTTTCAGGAACTTCCTATAGCTGCCGTTTACCTTCT
GTCTTAAAGAGCTTCTCTCTATGGTGCAATGCTCTAATCCCAGAGAAAAT
GTTACCCAAAGGTTGATTAACATCATCTTGAATT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGTAAATAAATGGATAAAA
AGAACATGTGATGAGCAGGGGTTCATGGCAGGAGTTGGGGAGAGAGATGT
GAAGGAAAGACATGATGAAGATACACTGTATAATGTATAAAAATTTCAAG
AATAAATAAAATGAAAAATCAATATACTCAAGACAAAGTCAAAAAGAAAC
AATGTACTTGGAGGATGATGTACATGCATGAAGGTCATTTTGAAATTTTA
TGATTTATTCAGAATCATTATTTTTTCGGTAAAAATTCATCTCAAATTGA
GAAGTTTCCAAATATATATCATCATTGTAGGTATTGGAATCATGAGAAAA
CGGTGTGCTCATGTGCAGTTGTAAAAAAAATGTGAAGAAATCTTATGTCC
CCTGTACCTTGTCAGTTCTAATGGTAATATATTTACCAGTTTTTTATTTC
CCAAAGTTGTTTGTTCACTTTTACACAGGAAACCCTCTGATATCCCTTGA
AGAATATATCCTCATCTTGCTTTTTTCTTACCCCATCCTTTTCTTCTTCC
TCCCTCTCTGCCACTCCCTTGCCCCTTTATTCTGTCCCCTTTTCTCGTTC
ACCTTGTGTTTTTTCTGTTTTTTTTCCTCATCCCCGCGGTTTTTTCCCTC
TTTTTATTTTATTTCCTCTACACTCATCTTTACCCTCATTTACTCCCTTC
TCTCTTCCTTACCATTTTCTTTTCCCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_c11.g1 MSMg01no472_c11.g1 CHROMAT_FILE:
MSMg01no472_c11.g1 PHD_FILE: MSMg01no472_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:41 2005
         (243 letters)



>mm_chr18_72863346_72863988
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaggtaaataaatggataaaaagaacatgtgatgagcaggggttcatggcaggagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaggtaaataaatggataaaaagaacatgtgatgagcaggggttcatggcaggagttg 260

                                                                       
Query: 61  gggagagagatgtgaaggaaagacatgatgaagatacactgtataatgtataaaaatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagagagatgtgaaggaaagacatgatgaagatacactgtataatgtataaaaatttc 320

                                                                       
Query: 121 aagaataaataaaatgaaaaatcaatatactcaagacaaagtcaaaaagaaacaatgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaataaataaaatgaaaaatcaatatactcaagacaaagtcaaaaagaaacaatgtac 380

                                                                       
Query: 181 ttggaggatgatgtacatgcatgaaggtcattttgaaattttatgatttattcagaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaggatgatgtacatgcatgaaggtcattttgaaattttatgatttattcagaatca 440

              
Query: 241 tta 243
           |||
Sbjct: 441 tta 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)