BAC Information

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BAC

Clone NameMSMg01-472J04
Chromosome18 (Build37)
Map Location 16,600,630 - 16,601,010
singlet/doubletsinglet
Overlap genenone
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472J04.T7 (MSMg01no472_j04.b1)MSMg01-472J04.TJ (MSMg01no472_j04.g1)
ACCAG555074AG555075
length775780
length of high quality
(start - end)
482 (46 - 527)381 (76 - 456)
definitionCHROMAT_FILE: MSMg01no472_j04.b1 PHD_FILE: MSMg01no472_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:15 2005CHROMAT_FILE: MSMg01no472_j04.g1 PHD_FILE: MSMg01no472_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTCCCTCTGAGCCCCATTTTTTAATGGGGTTATTCGATTT
TCTGGAGCAAAATTTGGAGCTGTGACAAAAGGATGGACCATCTAGTGATT
GCCATATCCAGAGATCCATCCCATAATCAGCTTCCAAACGCTGACACCAT
TGCATACACTAGCAAGATTTTGCTGTAAGGACCCAGATATAGCTGTCTCT
TGTGAGACTATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTC
AGCTAATGGATGGATCATATGTTTCCCAATGGAGGAGCTAGAGAAAGTAC
CCACGGAGCTAAAGGGAACTGCAACCCTATATGTGGAACAACAATATGAA
CTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGA
TGGCCTAGTCAGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACT
TTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGT
GGTTAGGGCATTCTTTTCCTTTCTCTTCTACGCTTTTTCCCTATTTATCC
TCCTCCTTATCTCCCCTCTTTCCATTTTTATTGCCAGAACCCCTCCCCAT
TTCCCCCTCTCCCGCTTTCCTTTTTTCTTTATTTTTTTCTTCCTCCTTTC
TACCCTTCTCATTATATTTCTATATCCTCTTTTTAATTTTTCTCTTCTTC
TTTCCCTCGCATTACCCCATACTTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTGAACATCTACCAGAAAGTGTT
CCTTTCATGTCCACAGACAAGAAGTCATTACCTTACTGCTGCATCTCAAC
CTTTTTTCTCAGTCGTGTTGTAGGACAGCTAAAGTAAGGAGAGATTTAAA
CTCTAAAACTAAAGAGTGCCGAGTCCAGGCTGCATGTGGAAGGGATGTAA
TGACATGGTTCCCACCCCTGGGAAAAGCCAGTAGTGTGTGGGCCTCCACA
AATGTTGATGGTTGCTGTGTTTTTAAGGCTTGTTTGTAAAATGATATACA
TATTTTCACATTCCTCCTTTGGGGAATGTGTCTCTTTGCCAAGGTTAGGG
ACTCCATGATAATCAGAGACAGCAGGAGTCTAGAAGGCAAGGGTGTGGCT
AATATTTCAGCAAAATGGTACAATGCTGTGACTTTCAGGACACCTTTTAT
GGCTGTGAGAAAGAACCTGATAACCGGACTTCACGATTATATAATTTCTC
AACTATGCTAAATATAATGATGCCTTATGAATTGTTTATCGCGTTTTCCA
AATCTTATGTAATAAAGTTACTTTGTTATAATGGTTTCATCTCACCGCCA
TTAAATCATTTTTGCTACCGCTATATTCTTATTATATCGCTCTTCCCCAT
TTGATTTTTTTTATGATTTCCCTTCTTTTACGCCTAATCTTTACTACCAC
GACTTTCCTTCCCCCTCTATCTATCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_j04.g1 MSMg01no472_j04.g1 CHROMAT_FILE:
MSMg01no472_j04.g1 PHD_FILE: MSMg01no472_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:15 2005
         (381 letters)



>mm_chr18_16600430_16601210
          Length = 781

 Score =  690 bits (357), Expect = 0.0
 Identities = 375/385 (97%), Gaps = 8/385 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgaacatctaccagaaagtgttcctttcatgtccacagacaagaagtcattacctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgaacatctaccagaaagtgttcctttcatgtccacagacaagaagtcattacctta 260

                                                                       
Query: 61  ctgctgcatctcaaccttttttctcagtcgtgttgtaggacagctaaagtaaggagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctgcatctcaaccttttttctcagtcgtgttgtaggacagctaaagtaaggagagat 320

                                                                       
Query: 121 ttaaactctaaaactaaagagtgccgagtccaggctgcatgtggaagggatgtaatgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaactctaaaactaaagagtgccgagtccaggctgcatgtggaagggatgtaatgaca 380

                                                                       
Query: 181 tggttcccacccctgggaaaagccagtagtgtgtgggcctccacaaatgttgatggttgc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttcccacccctgggaaaaaccagtagtgtgtgggcctccacaaatgttgatggttgc 440

                                                                       
Query: 241 tgtg----tttttaaggcttgtttgtaaaatgatatacatattttcacattcctcctttg 296
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgggcat----aaggcttgtttgtaaaatgatatacatattttcacattcctcctttg 496

                                                                       
Query: 297 gggaatgtgtctctttgccaaggttagggactccatgataatcagagacagcaggagtct 356
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 gggaatgtgtctctttgccaaggttaggaactccatgataatcagagacagcaggagtct 556

                                    
Query: 357 agaaggcaagggtgtggctaatatt 381
           |||||||||||||||||||||||||
Sbjct: 557 agaaggcaagggtgtggctaatatt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)