BAC Information

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BAC

Clone NameMSMg01-472P05
Chromosome18 (Build37)
Map Location 35,846,766 - 36,023,237
singlet/doubletdoublet
Overlap geneDnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5
Upstream geneGfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik
Downstream geneLOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472P05.T7 (MSMg01no472_p05.b1)MSMg01-472P05.TJ (MSMg01no472_p05.g1)
ACCAG555364AG555365
length777743
length of high quality
(start - end)
422 (77 - 498)198 (80 - 277)
definitionCHROMAT_FILE: MSMg01no472_p05.b1 PHD_FILE: MSMg01no472_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:46 2005CHROMAT_FILE: MSMg01no472_p05.g1 PHD_FILE: MSMg01no472_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,846,766 - 35,847,187)(36,023,048 - 36,023,237)
sequence
NCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTCTGTCGACCAAGCTGGCCTCCAACTCAGAAATCTGC
CAGCCTTTACCTCCCAAATGTTGGGATTAAAGGCGTGCGCCATCACTGCC
CGGCTTGTTCATAGTCTTGATTAACTAAGAACAATACTAGAATCCAACAA
CTGAGAACTCTATTGAAGTGAGCGTTAACTCCTAAGAGTTCTTGACACCT
CTCAGGTGCACTGAAGTTGAGACACTGTCCCTAGCTCATGCTGCCAATAA
TTTAGACATGTTGGGACTTGCGAGGCTGGAGAGATGGCTCAGAGGTTAAG
AGCACTTACTGCTCTTATACAAAACTAAGGTTCAGTTCTTAACAGCATAA
TGGGTGACTCACAACTGCCTGTAACTCTAGTTTCTTGATACCCTATTCTG
GCCTCTTTGGACACCTGTGCTCACAGAGTGAACACACCAATAACCACATG
CATAGGCATAAATGAAATTTTTTTTAAAAATCTGGTTTAAGGGATGTAGC
TTAAGCCTCCAAGTTCATGAACATGGCTAACCATATGAACCCCCAGAATC
TGATATCCTCACACTTTCGCCCCCCCCCCTCGCCGGCCTTTTTTTTCTTC
AATAATCACCCTTTTTTTTGTCTACTTTTCCTACGGAAATATATAAATTG
TGAAGGTTAAGCCCCCACCCTCCCTAATTAATTTTAAGGCCTTCTACGCT
CGCCTTCTTGCGCTTTGTGATGCATAG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCACACCCCACCACACAA
GACTTTTTTTTTTTTTTTAAGCCAGTGCCTGATACCTCTACACTCACTAA
AACTAAGGCTTTTTGGATTCCCAAAGTTCTGGCATCAGGGAAATGTAATC
ACCTTATTAGGATGTTTTGTTTCAGACAGGGCTGTTCTCCTGTCTCAGCC
TTCACAGCTGGGATTACTGGTTTGGNTCATCANANNTGNNCCANATATAT
ATTTAACCTCCACGCATTTGTTTTTTTATGCGCGGGGGAACGAACAGGCC
AAAAAAGGGGTTTTTTTCCCCCGCACCTGGTCCATACGAGTGGCTGCGAC
CTTCCCCCGTTGCTAACCTTCCTTTCTTCTTTTTGTGACGGCAATTCGTT
CTACATTATAATTTTCATTAACGCTGCTGTATTCTCTACACTGCCGGCGT
ATTCTAGCACCTCCCCATTGCATTTTGCTTACCGTTTCTTACATGCTTAT
TCCCCGTTATTTTTTTTTGTTATTTCCATTTCCTATTTATTTTGCCCGGG
TGTCTATCTGCTTTTTATTCAGCAGAATCATTACCCACCGGGTTCTTTTT
CTTATTTTAAGATCTGTCTCATCCGTTCGAGTTATTACTATTATTCTGCT
TATGACTTTACTAGCCCCGACCTAAACTCGCCCTGTTCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_p05.b1 MSMg01no472_p05.b1 CHROMAT_FILE:
MSMg01no472_p05.b1 PHD_FILE: MSMg01no472_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:46 2005
         (422 letters)



>mm_chr18_35846566_35847387
          Length = 822

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcctccaactcagaaatctgccagcctttacctcccaaatgttgggattaaaggcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcctccaactcagaaatctgccagcctttacctcccaaatgttgggattaaaggcgt 260

                                                                       
Query: 61  gcgccatcactgcccggcttgttcatagtcttgattaactaagaacaatactagaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgccatcactgcccggcttgttcatagtcttgattaactaagaacaatactagaatcca 320

                                                                       
Query: 121 acaactgagaactctattgaagtgagcgttaactcctaagagttcttgacacctctcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaactgagaactctattgaagtgagcgttaactcctaagagttcttgacacctctcagg 380

                                                                       
Query: 181 tgcactgaagttgagacactgtccctagctcatgctgccaataatttagacatgttggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcactgaagttgagacactgtccctagctcatgctgccaataatttagacatgttggga 440

                                                                       
Query: 241 cttgcgaggctggagagatggctcagaggttaagagcacttactgctcttatacaaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcgaggctggagagatggctcagaggttaagagcacttactgctcttatacaaaact 500

                                                                       
Query: 301 aaggttcagttcttaacagcataatgggtgactcacaactgcctgtaactctagtttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggttcagttcttaacagcataatgggtgactcacaactgcctgtaactctagtttctt 560

                                                                       
Query: 361 gataccctattctggcctctttggacacctgtgctcacagagtgaacacaccaataacca 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gataccctattctggcctctctggacacctgtgctcacagagtgaacacacaaataacca 620

             
Query: 421 ca 422
           ||
Sbjct: 621 ca 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_p05.g1 MSMg01no472_p05.g1 CHROMAT_FILE:
MSMg01no472_p05.g1 PHD_FILE: MSMg01no472_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:46 2005
         (198 letters)



>mm_chr18_36022842_36023439
          Length = 598

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   caccccaccacacaagactttttttttttttttaagccagtgcctgatacctctacactc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caccccaccacacaagactttttttttttttttaagccagtgcctgatacctctacactc 337

                                                                       
Query: 67  actaaaactaaggctttttggattcccaaagttctggcatcagggaaatgtaatcacctt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actaaaactaaggctttttggattcccaaagttctggcatcagggaaatgtaatcacctt 277

                                                                       
Query: 127 attaggatgttttgtttcagacagggctgttctcctgtctcagccttcacagctgggatt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attaggatgttttgtttcagacagggctgttctcctgtctcagccttcacagctgggatt 217

                     
Query: 187 actggtttgg 196
           ||||||||||
Sbjct: 216 actggtttgg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)