BAC Information

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BAC

Clone NameMSMg01-473E23
Chromosome18 (Build37)
Map Location 4,771,530 - 4,771,929
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473E23.T7 (MSMg01no473_e23.b1)MSMg01-473E23.TJ (MSMg01no473_e23.g1)
ACCAG555639AG555640
length776797
length of high quality
(start - end)		492 (51 - 542)412 (81 - 492)
definitionCHROMAT_FILE: MSMg01no473_e23.b1 PHD_FILE: MSMg01no473_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:20 2005CHROMAT_FILE: MSMg01no473_e23.g1 PHD_FILE: MSMg01no473_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTATCTCTGTAACCCATTTTTAAATATGGTTATTT
GATTTTCTGGAGTCCATCTTCTTGAGTTCTTTATATATATTGGATATTAG
TCCCCTATCTGGTTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAAT
TTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTGC
TGTTCTGTGCAGGAATTTTCCCCCTGTGTCCATATCTTTGAGGCTCTTCC
CCCTTTCTTCCTTTCTTCAGTGTCTCTGTTTTTTGTGGAGTTCCTTGATC
CAGTTACACTTGAGGAGATAAGAATGGATTAATTCACATTCTTCTACATG
CTAATTGCCAGTTGAGCCAGCACCATTTGTTGAAAATGCTGTCTTCTTTC
CACTGGATAGTTTTAGCTCCTTTGTCAAAGGTCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCAATTGATCTATCTGTCAAT
CACTGCAACATGCAGTTTTTTTTGGTTTGATTTGCTTTCGATTCTCGGCG
GACGGGGGATCTTGCGGACCGTANCTTCTACACCCCCCCATTTCCCTCTC
NTCACATTTTTTATTTTCTTCCCTTCTCGTCTCACCCTCTCCTGTTTTTA
CCTCCTCTTCCCCCTCCTATACAAAA

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTGCCTACTAAGCTCT
TTCATCTTGATCAGGCTGCCATTGTTTCTGAATCGCAGTTTCTCACTTTA
GATTAATGTGAACACAGCCAGCACTGTGCGTAGGTGCGTAGGTGATGGAG
GGCTCCCAGGGGCAGGGATTGCCATTTATTTCATACATCACTGTTTGTCT
AATGCCTACAATTGTATTTGACACACAGGAAGCATTTAGTACTTTCTGAG
TTAGTGAGGAAAACAGTGTGTACCAGACCTTGTATTGCTTTTCATGATGC
GTGCTTACTGTTGATATTATTGAATAGGTCATAACTATTTCTGAGAAGAA
ATCAGGGAAACTGCCTCTGTACAGCAATATATGACTTATGTACTGACCTT
TCCATGCCAATTGGCATCCATAAAGCTGTTGTCGCTACTACTGCTGAGAT
TTCTCCATCACTGTCCTACTTTTATTTAAGGACTACTGGTCAATTGATTT
CATGGGACCTTTCTTGGAAATTGGGGTAACAAGCCAAACTTGCCAGAAAA
AAAATTTCCAGGGGCTTTTTTTTTAAAAATTGNNNAGGGNNTGGTTTNAA
AANNNCCCCCNGNAAAAGAGAGTTTTTTAAAGGTGTTTTTTTTTCTATTT
GGGGAGAAAAACCCCGCGGGCTTCTTTTTGAGGAAAACCTCAAACTACTT
TCCTTTCTTTCCGCGCGGGAAAATCAAACAAAAAACCGCGTGCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_e23.g1 MSMg01no473_e23.g1 CHROMAT_FILE:
MSMg01no473_e23.g1 PHD_FILE: MSMg01no473_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:20 2005
         (412 letters)



>mm_chr18_4771119_4771929
          Length = 811

 Score =  721 bits (373), Expect = 0.0
 Identities = 394/401 (98%), Gaps = 1/401 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctaagctctttcatcttgatcaggctgccattgtttctgaatcgcagtttctcactttag 71
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 811 ctaagctctttcatcttgatcaggctgccattgtttctgaatcccagtttctcactttag 752

                                                                       
Query: 72  attaatgtgaacacagccagcactgtgcgtaggtgcgtaggtgatggagggctcccaggg 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 attaatgtgaacacagccagcactgtgcgtaggtgcgtaggtgatggagggctcccaggg 692

                                                                       
Query: 132 gcagggattgccatttatttcatacatcactgtttgtctaatgcctacaattgtatttga 191
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gcagggattgctatttatttcatacatcactgtttgtctaatgcctacaattgtatttga 632

                                                                       
Query: 192 cacacaggaagcatttagtactttctgagttagtgaggaaaacagtgtgtaccagacctt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cacacaggaagcatttagtactttctgagttagtgaggaaaacagtgtgtaccagacctt 572

                                                                       
Query: 252 gtattgcttttcatgatgcgtgcttactgttgatattattgaataggtcataactatttc 311
           | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 g-aaggcttttcatgatgcgtgcttactgttgatattattgaataggtcataactatttc 513

                                                                       
Query: 312 tgagaagaaatcagggaaactgcctctgtacagcaatatatgacttatgtactgaccttt 371
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 512 tgagaagaaatcagagaaactgcctctgtacagcaatgtatgacttatgtactgaccttt 453

                                                    
Query: 372 ccatgccaattggcatccataaagctgttgtcgctactact 412
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccatgccaattggcatccataaagctgttgtcgctactact 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space:   323206
Effective search space used:   323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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