BAC Information

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BAC

Clone NameMSMg01-473F21
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473F21.T7 (MSMg01no473_f21.b1)MSMg01-473F21.TJ (MSMg01no473_f21.g1)
ACCAG555683AG555684
length750758
length of high quality
(start - end)
282 (49 - 330)457 (78 - 534)
definitionCHROMAT_FILE: MSMg01no473_f21.b1 PHD_FILE: MSMg01no473_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:25 2005CHROMAT_FILE: MSMg01no473_f21.g1 PHD_FILE: MSMg01no473_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGAACTTTCTGTCCTTTCAGGTCCACATTTGCTCTGGCTC
TGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAA
TGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAAGGCTCCACTC
ACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTTAGGAATTT
GTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATG
GTTAATTTTTTTTTTTTTTTTTTTTTTTTTATCAGAGNNTCTCTGTATAG
CCCTGGCTGTCCTGGAACTCACTTTGCAGACCAGGCTGGGCTCGAACTCA
GAAATACACCTGCCTCTGCCTCCCGAGTGCTGTGATTAAAGGCGTGCACC
ACCACGCCAGGCCCCATGTTTAATGTTTAGTAAACATTTAATAAACATTT
AATAAACATTGTGAAGGTCTGAAGAGATGGATCAGCAGTTAAGAGCATTG
ACTTTTCTTGCAGAGGCCCTGAGTTCAATTCTCAGGAATCACATGGCGGC
TTTGGAATCGGATGCTCACTTTTGGCGGGTGTTGTAAGACATCTGCTATG
GACCCTTAACTTTTCTTTTTTTTTTTTAATTTCAAACATAACTCTCACAA
TGTTTGTCACGACCTTGGATTTATCTACTTCTTTCTTTGTGGACTGTAAG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTCACAATGATAGGAAGAGC
CGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCAC
AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCC
AAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTAC
TGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTT
CTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGT
GTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCG
CGCCCGCCCGCACGCGCGGGACGGACGCTTGGCGCCAGAAGCGAGAGCCC
CTCGGGGCTCGCCCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATGAG
AGTAGTGGTATTTCACCGGCGGCCCGCGAGGCCGGCGTGCCCCGACCCCG
ACGCGAGGACGGGGCCGGGCGCCTGTGGCCTCCCCTTATTCTACACCTCT
CATGTCTCTTCATCGTGCCATATTAGAACCACGCTCCACACGGTCCCTCT
TCTCCCCCTGACTCCTCCAAGTCCTTTTACCTGTGTGGGTTCTCCTTGGA
TCTCTTCTATGATTCCTGTTTTTCCCTTTTTTCTTTTTTCCTCCCCTCCA
CATTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_f21.b1 MSMg01no473_f21.b1 CHROMAT_FILE:
MSMg01no473_f21.b1 PHD_FILE: MSMg01no473_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:25 2005
         (282 letters)



>mm_chr18_40467470_40468150
          Length = 681

 Score =  375 bits (194), Expect = e-108
 Identities = 239/254 (94%), Gaps = 1/254 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactttctgtcctttcaggtccacatttgctctggctctggcaactgact 64
           ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 456 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 397

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 396 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 338

                                                                       
Query: 125 ccctaacagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctg 184
           | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 337 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 278

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 277 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 218

                         
Query: 245 acttcatggttaat 258
           |||||||| |||||
Sbjct: 217 acttcatgtttaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space:   183456
Effective search space used:   183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)