BAC Information

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BAC

Clone NameMSMg01-473I15
Chromosome18 (Build37)
Map Location 78,497,257 - 78,497,776
singlet/doubletsinglet
Overlap geneSlc14a2
Upstream geneLoxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1
Downstream geneEG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473I15.T7 (MSMg01no473_i15.b1)MSMg01-473I15.TJ (MSMg01no473_i15.g1)
ACCAG555814AG555815
length1,288780
length of high quality
(start - end)		---523 (79 - 601)
definitionCHROMAT_FILE: MSMg01no473_i15.b1 PHD_FILE: MSMg01no473_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:39 2005CHROMAT_FILE: MSMg01no473_i15.g1 PHD_FILE: MSMg01no473_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATAGAAAGTGGCGATCCGTCATCAAACAGTAGAATTTTCAACAAAAC
GGGAGTGGAAGACGNAAAGTCTGTTTCCCCCTCGCTCTGGTNAGAACCGA
GACTGAGCTGACGCGACGGCCTCGATGATTCTTTCGATTTTGGGATTATG
TGCTGGTCTTGTTCTGGGACGAAAGCGTGGTTTAGTGCATGATATATACT
AATTACACTCTGTGTGTCGCTTCTTCTCTAATCTATAAAGCCATTTTACA
CGAATACTTATAACCAACTAGAGCTTGGGCTCGCGTACGTCTATTGAGTT
TTGTCATAGGATACGGACAACTCCATCTCACATCGTGTAGTTTAACTTAT
AGATATCGCGTATTACGCTGTGTGTCATCCGTATTCGGTAACTAGCACCA
GTATCTTTATAGCGTTAATTCACAGGCGTTAACACAAGAAGGCGACAGGA
ACTAATTAGGTATCAGACATCGAATTGCCCATTATTATGCGAGAAAGGTT
AGTAGGAAATGAAGAGCATGGCTTACAATACATAGGAATCAGTCAAACTG
TAAACACCACACAGATACATAACGAATGATACTGATAACCGGCCCAACTA
AAAGACGCCATGTATATTTCCCCTAGCCCACCCCTCGCTCTCACCTCTTG
GCTCGCACTTGTAGGGAGCCGGAGTGTCATCAATTATCATACGATCGAAA
CTTCCAGTCGATCAGAGAGCGTCCCATAAATCTTTGTGTGATGCGCACGA
GATACGGCGTAGCGATATGACTCGTCATTTAGTAGTTAAGCACTTGACAC
TGCTCGACATACGCGCGCGAATTAATATGACATGACGCGTATAAGTCAGA
TGATCGGTGTCAGCGTAGATACGTCCATGGACTGCAGATCTGATGACAGC
GAGGACACCGCACTCACTACATACTAACGAGATAATCGCGGCGCTATCGA
CACTCGCTAGAGGCAAGACAGTCACCCGATACTTATACCTGCTTCTGTCT
CTACGGTCTAGAGCTGTAGTAACGCTCTATCTCTACCCGGATAAATATGC
GGCTGTGGCGCACATGTACGAGGTAGTAGATCGGAACGTATGTGTCGCGA
TATATAGCCAGATGTGTCCAACACGACGGAGCGACTCTGTAGAGCGAGGT
ATAGACTCATGAGCGTAGGTGTTCTCTTCGTGATATGGAAGAGCGCATGT
GCGTCGTCAGTGAGTGGATGTGATGCGTGCGACCAGCAGACTGTATGACA
CAGCCGAGTATAATCGTGAGACATCACTACACGTACGN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACATTCCAACATCAGCAT
GGAGGACAGGCCCTTGGCCCTGCCAGACTGACTTCAGCCTCTCCCCACCC
CCCAACAAGTAATTGCTTCATGGGTCTCCAAAGCAGACCCTGCTGTGGGT
AACCCTTGGAAGTGACACTCTGTTTTCTGAAGGGAATGAAAGGGTCTGGA
GTGGCCAACAGACTCCTTAGCAGGAGGGTTTGTTATTCTTTAACTGTGGC
ATTAAACCTCAGGCTAGCATTATATAAACAAGCATGCTGCGAGCCAACTT
GCATAGTTAGCTTTCCTAGATAGGCTTTACCATGGTCAGGGTCAGTCTCA
CTCAGAGGTTCAGGCAGCCACCAGTTTTGGGCTGGAAGTTTTAAATCCTG
GGGCTCCTAACCCTCCTTTCTTCTTCCAGAACTTTCTTATCTTTTGACTG
AAATTCTACCTTTGACATGTGGGCATTCTACTGGGAACCGCAATTTCTCT
TTCCCTGAGAAAGATATTAGCTAAACCCTGAGAAGGATAAAAAAAAAATA
CCCTGCCAATTTCAGAAAACAATGAGAAAACTCAACATCATGTCCCAAAG
CTCAAGTGCTGTAAAACTAATGTGCTCCTGGTTGTAACTCTTGTAGAAAA
AAATGTAAGTGTAATGTCCAACTCAGTAATACAGCTTTAAATTGATATTC
TATCCTCCCCAAAAAGAATATGTACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_i15.g1 MSMg01no473_i15.g1 CHROMAT_FILE:
MSMg01no473_i15.g1 PHD_FILE: MSMg01no473_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:39 2005
         (523 letters)



>mm_chr18_78497057_78497979
          Length = 923

 Score =  975 bits (504), Expect = 0.0
 Identities = 516/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagacattccaacatcagcatggaggacaggcccttggccctgccagactgacttcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 caagacattccaacatcagcatggaggacaggcccttggccctgccagactgacttcagc 661

                                                                       
Query: 61  ctctccccaccccccaacaagtaattgcttcatgggtctccaaagcagaccctgctgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctctccccaccccccaacaagtaattgcttcatgggtctccaaagcagaccctgctgtgg 601

                                                                       
Query: 121 gtaacccttggaagtgacactctgttttctgaagggaatgaaagggtctggagtggccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtaacccttggaagtgacactctgttttctgaagggaatgaaagggtctggagtggccaa 541

                                                                       
Query: 181 cagactccttagcaggagggtttgttattctttaactgtggcattaaacctcaggctagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cagactccttagcaggagggtttgttattctttaactgtggcattaaacctcaggctagc 481

                                                                       
Query: 241 attatataaacaagcatgctgcgagccaacttgcatagttagctttcctagataggcttt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 480 attatataaacaagcatgctgcgagccaacttgcatagttagctttcctagacaggcttt 421

                                                                       
Query: 301 accatggtcagggtcagtctcactcagaggttcaggcagccaccagttttgggctggaag 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 420 accatggtcagggtcagtctcactcagaggtgcaggcagccaccagttttgggctggaag 361

                                                                       
Query: 361 ttttaaatcctggggctcctaaccctcctttcttcttccagaactttcttatcttttgac 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttttaaatcctggggctccttaccctcctttcttcttccagaactttcttatcttttgac 301

                                                                       
Query: 421 tgaaattctacctttgacatgtgggcattctactgggaaccgcaatttctctttccctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgaaattctacctttgacatgtgggcattctactgggaaccgcaatttctctttccctga 241

                                                   
Query: 481 gaaagatattagctaaaccctgagaaggataaaaaaaaaa 520
           ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 240 gaaagatattagctaaaccctgagaagtataaaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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