Query= MSMg01no473_k01.b1 MSMg01no473_k01.b1 CHROMAT_FILE:
MSMg01no473_k01.b1 PHD_FILE: MSMg01no473_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:47 2005
(134 letters)
>mm_chr18_58150324_58150857
Length = 534
Score = 223 bits (115), Expect = 5e-63
Identities = 121/123 (98%)
Strand = Plus / Minus
Query: 1 gatctcctctccatatctctgaataaaatctggggttttgaaatggcttattttaaattg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 323 gatctcctctccatatctctgaataaaatctgggtttttgaaatggcttattttaaattg 264
Query: 61 ggacaattttatctcgaatatgggatttatttgccagagaatcctgcattcttggtgggg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggacaattttatctcgagtatgggatttatttgccagagaatcctgcattcttggtgggg 204
Query: 121 ggg 123
|||
Sbjct: 203 ggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space: 66276
Effective search space used: 66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_k01.g1 MSMg01no473_k01.g1 CHROMAT_FILE:
MSMg01no473_k01.g1 PHD_FILE: MSMg01no473_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:47 2005
(516 letters)
>mm_chr18_57975571_57976483
Length = 913
Score = 911 bits (471), Expect = 0.0
Identities = 500/511 (97%), Gaps = 3/511 (0%)
Strand = Plus / Plus
Query: 6 aattctctccagagttgccttcctaagaatgtatgacttgttcctcaacactaaggacct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctctccagagttgccttcctaagaatgtatgacttgttcctcaacactaaggacct 265
Query: 66 gagaccctgttttcagtgaacttgtctaattttgaagatagtccagtggccagtctgagg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagaccctgttttcagtgaacttgtctaattttgaagatagtccagtggccagtctgagg 325
Query: 126 gttactaaagccactctaatattctccagtacttctcaatgtattgtgaattatagataa 185
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 gttactaaagccactctaatattctccagtacttctcaacgtattgtgaattatagataa 385
Query: 186 ccttgaagaatgtcatctccaaaccacagaaacaaaaggcagtggagaatatgtcaacgg 245
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 386 ccttgaagaatgtcatctccaaaccacagaaacaaaaggcagtggagaatatatcaacgg 445
Query: 246 tagaaagtcgttgataaatttagttttctttatacttggtgtttcctccgaattctactc 305
||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 446 tagaaagtcgtcgataaaaatagttttctttatacttggtgtttcctctgaattctactc 505
Query: 306 caattctggggaaccagaaaatggatctctggagctagatggataaaaataccaggataa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caattctggggaaccagaaaatggatctctggagctagatggataaaaataccaggataa 565
Query: 366 tgtttttagggggactttagagattatgtagctagcctccaactttcttcaggtcctcct 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtttttagggggactttagagattatgtagctagcctccaactttcttcaggtcctg-- 623
Query: 426 atatattgggatgacttctctgacatagtcatgtagctgcagcaagactggatcctaaac 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 -tatattgggatgacttctctgacatagtcatgtagctgcagcaagactggatcctaaac 682
Query: 486 caattctctccatttatgtcacatcactccc 516
|| ||||||||||||||||||||||||||||
Sbjct: 683 catttctctccatttatgtcacatcactccc 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 913
Length adjustment: 10
Effective length of query: 506
Effective length of database: 903
Effective search space: 456918
Effective search space used: 456918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
